Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00015
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                113   7e-26
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               28   6.1  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             27   8.1  

>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score =  113 bits (273), Expect = 7e-26
 Identities = 53/86 (61%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 LEETRPQRPLMPQ-DCFKRAKVREICEMIASGIQPLQNLIVLIYVGEETKKEWSQHWVTR 430
           L+ETRP  PL+P+ D  KRA VR+I   IASGIQP+QNL VL YVG + K EW  +W+ R
Sbjct: 4   LDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNLKVLQYVGPDKKVEWGHYWIDR 63

Query: 431 GFRAIEKLLSTTAGKYCVGDEITLAD 508
           GF+ +EK+L  TAGKYCVGD+IT+AD
Sbjct: 64  GFQCLEKMLVQTAGKYCVGDDITMAD 89



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 511 CLVPQVFNARRFHVGL 558
           CLVPQV+NA RF V +
Sbjct: 91  CLVPQVYNANRFKVDM 106


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 374  LIYVGEETKKEWSQHWVTRGFRAIEKLLSTTAGKYCVGDEITL 502
            +++ G+E      +  +T  ++AI   L+TT    CV D ITL
Sbjct: 916  MVHNGDECPAASQRVTITVNYKAINTQLATTKTSACVNDSITL 958


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 135 IKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIE 233
           ++GGG+QHC+E      ME+     +   T+I+
Sbjct: 140 VRGGGKQHCDEARLKPAMEEQSRTVLTDGTIIK 172


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 263 TRPQRPLMPQDCFKRAKVREICEMIASGIQP-LQNL 367
           TR Q P +P    +R + RE C   A  + P L+NL
Sbjct: 4   TRSQHPALPSSTDRRTEEREFCYGFAVELTPLLENL 39


>SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 54  LAHSCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNP 185
           L HS +W V    N K   Y++  + L +G  E++   + +++P
Sbjct: 306 LVHSENWAVYSMYNTKSRRYELVVLELYEGYEERNSTAFSSMDP 349


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 278 PLMPQDCFKRAKVREICEMIASGIQPLQNLIVLIYVGEETKKEWSQHWVTRGF 436
           PL P+   + AK+  +   I  GI      +VL   G++  + W + W  + F
Sbjct: 122 PLRPRMTARMAKICIVIAWIVPGIVITPYALVLRLEGKQCLENWPEDWYVKIF 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,857
Number of Sequences: 59808
Number of extensions: 361744
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)