Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00015
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.8  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 109 GISLRLSAMRTRQEHECASM 50
           GIS  +SA+R  ++HE A++
Sbjct: 438 GISRAMSALRILEKHELANV 457


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 85  MRTRQEHECASMSII 41
           M+ ++EH+ ASM+I+
Sbjct: 61  MKWKKEHKMASMNIV 75


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 436 EAPCDPV 416
           EAPCDPV
Sbjct: 58  EAPCDPV 64


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 436 EAPCDPV 416
           EAPCDPV
Sbjct: 58  EAPCDPV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,924
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)