Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00014
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 359 FPFSIQCNSTNYLEETTILKV 297
           F FS   N  NY   TT+LK+
Sbjct: 27  FGFSYLLNCKNYDHPTTLLKL 47


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 547 TNKKQQKRDTRTKCIILILFLI 482
           ++ K++++ T+T  I+L +FLI
Sbjct: 609 SSAKKERKATKTLAIVLGVFLI 630


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 512 GACISFLLLFICA*CKL*FQVNIF 583
           G C+ FL+ F C      F VN F
Sbjct: 452 GFCLLFLMFFECIAISWAFGVNRF 475


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 512 GACISFLLLFICA*CKL*FQVNIF 583
           G C+ FL+ F C      F VN F
Sbjct: 505 GFCLLFLMFFECIAISWAFGVNRF 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,239
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)