Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00014
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19600.1 68418.m02333 sulfate transporter, putative similar t...    28   4.0  
At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2...    28   4.0  
At5g39420.1 68418.m04775 protein kinase family protein contains ...    27   9.3  
At2g05082.1 68415.m00531 hypothetical protein                          27   9.3  
At1g76420.1 68414.m08883 no apical meristem (NAM) family protein...    27   9.3  

>At5g19600.1 68418.m02333 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain; supporting cDNA
           gi|14141683|dbj|AB061739.1|
          Length = 634

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 475 TPVSRIVLGLCIWCVYLFFAAFY 543
           TP+S +V+G+C+  V LF A  +
Sbjct: 394 TPMSNVVMGVCMMLVLLFLAPLF 416


>At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2.4)
           plant glutamate receptor family, PMID:11379626
          Length = 898

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -1

Query: 586 FENIYLKSQFTSGTNKKQQKRDTRTKCIILILFLIQEYITAGMRLTV 446
           F+++Y+    T   NK++ KR      ++ ++F+    +  G   T+
Sbjct: 6   FQDVYIPRYLTKTKNKRKMKRHLNDVVLVFLVFIFGVKLGKGQNTTI 52


>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 515 HQMHNPNTILDTGVHHGGNAFNSTVKPDNSAVSSFEINLYD 393
           +Q  + + +  T V    N F   +KPDN +V   + N YD
Sbjct: 514 YQPSSKSQLSGTSVAFAKNTFGLNLKPDNDSVWEVQGNNYD 554


>At2g05082.1 68415.m00531 hypothetical protein
          Length = 231

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 323 LEETTILKVIHEVLVDGYYYYM 258
           ++E TIL    +VL DG++YYM
Sbjct: 14  IQEGTILWKYKDVLKDGFWYYM 35


>At1g76420.1 68414.m08883 no apical meristem (NAM) family protein
           N-term similar to N-term of NAM GB:CAA63101 [Petunia x
           hybrida] (apical meristem formation), CUC2 GB:BAA19529
           [Arabidopsis thaliana],  GRAB2 protein GB:CAA09372
           [Triticum sp.]
          Length = 334

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 497 NTILDTGVHHGGNAFNSTVKPDNSAVSSFEINLYDCYQDNILMNEY 360
           N  L T  HH   A    ++P N  +++F   LYD    N   N +
Sbjct: 190 NHSLSTTHHHHHEALPLLIEPSNKTLTNFPSLLYDDPHQNYNNNNF 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,139
Number of Sequences: 28952
Number of extensions: 243978
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)