Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00013
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.7  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    26   6.7  

>SPAC22E12.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 59

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 659 VQGKLSYIQVPNNNIRTVGLPSN 591
           V+GKL ++ VPN  ++ V L +N
Sbjct: 2   VKGKLKWVAVPNLTLKFVNLDTN 24


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 464 ILILFLTSSVTVFVVR-TKSKKLPYYLLCGDYDKGK 568
           I+I  + S++ +F  R T  KKLP   L G  D GK
Sbjct: 15  IIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGK 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,970
Number of Sequences: 5004
Number of extensions: 63871
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)