Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00013
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.25 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   4.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   4.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 472 IISNVFSYSFRGQDQVKETAILFTVWGLRQRERSSTERVILLGRP 606
           ++S  +    RG+ +VK   I+ T W  ++  RSS+ + I +  P
Sbjct: 569 LLSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQEP 613


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 603 TDGPNVVVRNLYIRKL 650
           TDGP +V  NL++R +
Sbjct: 55  TDGPAIVRVNLFVRSI 70


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 626 NNNIRTVGLPSNITRSVEDLSLCRNPHTVNSMAVSL 519
           +N  +TV L SN   S +D+SL R P  +   A  L
Sbjct: 94  SNTSKTVIL-SNKLESSDDISLFRGPEGIQINATEL 128


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 626 NNNIRTVGLPSNITRSVEDLSLCRNPHTVNSMAVSL 519
           +N  +TV L SN   S +D+SL R P  +   A  L
Sbjct: 94  SNTSKTVIL-SNKLESSDDISLFRGPEGIQINATEL 128


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 626 NNNIRTVGLPSNITRSVEDLSLCRNPHTVNSMAVSL 519
           +N  +T+ L SN   S +D+SL R P  +   A  L
Sbjct: 94  SNTSKTIIL-SNKLESSDDISLFRGPEGIQINATEL 128


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/65 (18%), Positives = 27/65 (41%)
 Frame = -3

Query: 746 RKNSIVTVVAGSHHSTQDI*HMPESRLRHVQGKLSYIQVPNNNIRTVGLPSNITRSVEDL 567
           R++S           T+D        L+H++  +  +  P+N +  V L + +++  E  
Sbjct: 40  RQSSFEVTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVALGALLSKGEESF 99

Query: 566 SLCRN 552
              R+
Sbjct: 100 PTARS 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,640
Number of Sequences: 438
Number of extensions: 4767
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)