Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00012
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   116   3e-27
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   116   3e-27
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.51 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.6  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  116 bits (279), Expect = 3e-27
 Identities = 53/86 (61%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKP   GVN LK  R+ +  A+E            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           SHKAIRRDP+INWIVN VHKHRE RG
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRG 163



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 164 LTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  116 bits (279), Expect = 3e-27
 Identities = 53/86 (61%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKP   GVN LK  R+ +  A+E            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           SHKAIRRDP+INWIVN VHKHRE RG
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRG 163



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 164 LTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 381 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI-VRCVVDFGWSQLPRS 539
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+ VR     G+   P++
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISVKVRKAWIAGYGSQPQN 100


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 386  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 490
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,790
Number of Sequences: 5004
Number of extensions: 60037
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)