Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00012
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 108 4e-24
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 108 4e-24
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.004
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 2.9
01_01_0652 + 4975091-4975585 29 2.9
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 5.0
05_02_0037 + 5883285-5884292 29 5.0
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 108 bits (260), Expect = 4e-24
Identities = 47/86 (54%), Positives = 59/86 (68%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
G YGKPK G+ QLK RN +S+A+E +SYWV +DS+YKYFE+ILVD
Sbjct: 183 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 242
Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
+H AIR DP+INW+ VHKHRE+RG
Sbjct: 243 AHSAIRNDPRINWLCKPVHKHRELRG 268
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/56 (67%), Positives = 46/56 (82%)
Frame = +3
Query: 24 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 162
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
LTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 269 LTSAGKKYRGLRGKGHTHHKARP-SRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 108 bits (260), Expect = 4e-24
Identities = 47/86 (54%), Positives = 59/86 (68%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
G YGKPK G+ QLK RN +S+A+E +SYWV +DS+YKYFE+ILVD
Sbjct: 78 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 137
Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
+H AIR DP+INW+ VHKHRE+RG
Sbjct: 138 AHSAIRNDPRINWLCKPVHKHRELRG 163
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 21 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 57
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
LTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 164 LTSAGKKYRGLRGKGHTHHKARP-SRRATWKRNQTVSLRRYR 204
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.004
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 407 FEVILVDPSHKAIRRDPK 460
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 26.6 bits (56), Expect(2) = 0.004
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRN 310
G Y KPK G+ QLK RN
Sbjct: 273 GIVYSKPKHQGITQLKFQRN 292
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 624
L GR + G G + +GG RR AW RR + R
Sbjct: 138 LVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 514 SAGRSSRGLGKGHRYSQTKGGSRRAAW 594
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 690 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 511
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 510 Q 508
+
Sbjct: 2018 E 2018
>05_02_0037 + 5883285-5884292
Length = 335
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 104 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQ 235
AV ++ AP ++ +A +SP C R CC +P + WWP+
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,849,276
Number of Sequences: 37544
Number of extensions: 440111
Number of successful extensions: 1085
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -