Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00012
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   6e-26
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 31   1.3  
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)          30   2.2  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   3.9  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  114 bits (275), Expect = 6e-26
 Identities = 51/86 (59%), Positives = 62/86 (72%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G+TYGKP + GVN+LK  R+L+S+A+E            +SYWV QDS YKYFEVI+VDP
Sbjct: 78  GATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
            HKAIRRD +INWI    HKHRE+RG
Sbjct: 138 FHKAIRRDARINWICKPTHKHRELRG 163



 Score =  105 bits (251), Expect = 5e-23
 Identities = 45/57 (78%), Positives = 53/57 (92%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQ 57



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 164 LTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 110 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASSC*GSTYGKPKSH 280
           P  D+      AH+    P T ++PC    C  QNPC+   P   +   STYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 260 KWTLSNWTLAATTSHTDSEYNITLFSTVA*SSGFVRPCGPGSAVH-TSQLTVLPYP 96
           KW L+N +     +     Y+ TL +TV   +G+   C P +A H     T++P P
Sbjct: 766 KWRLANGSSTNERTFMPDGYSATLTTTVGTPAGYQNDCKPCTAGHYCLNATIVPSP 821


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 68  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 232
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 233 QASSC*GSTYGKPKSHGVNQ 292
              +   ST G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
          Length = 802

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 499 DAWLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQ 615
           D+W+T AG +S G       ++  G  R++ W  R T++
Sbjct: 435 DSWVTGAGDASSGSAVTFEIARVLGRLRKSGWRPRRTIK 473


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,839,569
Number of Sequences: 59808
Number of extensions: 499829
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)