Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00012
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           109   2e-24
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           109   2e-24
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    29   2.4  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.5  
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea...    28   7.3  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   9.6  
At3g18050.1 68416.m02296 expressed protein                             27   9.6  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G  YGKP + GV QLK  R+ +S+A+E            +SYW+ +DS+YKY+E+ILVDP
Sbjct: 78  GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           +H A+R DP+INWI N VHKHRE+RG
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRG 163



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/57 (71%), Positives = 47/57 (82%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 164 LTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G  YGKP + GV QLK  R+ +S+A+E            +SYW+ +DS+YKY+E+ILVDP
Sbjct: 78  GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           +H A+R DP+INWI N VHKHRE+RG
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRG 163



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/57 (71%), Positives = 47/57 (82%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 164 LTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/94 (25%), Positives = 48/94 (51%)
 Frame = +2

Query: 419 LVDPSHKAIRRDPKINWIVNAVHKHREMRG*LRLVAAPEVSARDIDTLKQREAHAGQLGS 598
           L++PS K++   P++++ V++ H  + M    +L+A    S+RD + +    A +   G 
Sbjct: 23  LLNPS-KSLSHLPRVSFSVSSPHSLKLMTS-TKLIAMASASSRDFE-MSNLTALSPLDG- 78

Query: 599 DATLFNYVANDKHLSKTVSDFPFAYFCMQMESQW 700
                 Y    K L+ ++S+F   YF + +E +W
Sbjct: 79  -----RYWGKVKDLASSMSEFGLIYFRVLVEIKW 107


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 374 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 475
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
           family protein similar to YTM1 - Homo sapiens,
           EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies,1 weak);
          Length = 402

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = -3

Query: 329 HQQWIEGCAWASTG*HHGSWACHKWTLSNWTL--AATTSHTDS 207
           H  WI  C W  +   H   A +   +  W L  A  T HT S
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKHTHS 399


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 96  RVWQYRQLTRMHRAPRPTRPD 158
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 159 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 40
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,226
Number of Sequences: 28952
Number of extensions: 331276
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)