Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00011
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 133 3e-32
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 5e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 84 2e-17
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 2e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 3e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 60 4e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 1e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 2e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 58 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 57 3e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 57 3e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 7e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 55 9e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 52 7e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 51 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 8e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 1e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 47 3e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 9e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 37 0.004
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 36 0.008
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.044
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 32 0.10
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 29 0.54
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.54
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.71
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.71
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.9
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 6.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 6.6
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 133 bits (321), Expect = 3e-32
Identities = 61/98 (62%), Positives = 75/98 (76%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L L V LDEADRMLDMGFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA
Sbjct: 260 LDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Query: 390 DYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
DYL DYIQ+ +GSL L+A+HNI QIV++ +K +L
Sbjct: 320 DYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARL 357
Score = 119 bits (287), Expect = 4e-28
Identities = 57/83 (68%), Positives = 64/83 (77%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IAT
Sbjct: 193 GDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
Query: 190 PGRLIDFLEKGTTNLQRCTYLVL 258
PGRL+D L+ TNL+R TYLVL
Sbjct: 253 PGRLLDMLDSNKTNLRRVTYLVL 275
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/68 (55%), Positives = 52/68 (76%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K +IF TKR A+ I+R +R+ GWPA+ +HGDK Q ER VL +F+ G++ I+VATDVA+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 728 RGLDVDGI 751
RG+DV GI
Sbjct: 431 RGIDVKGI 438
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 92.7 bits (220), Expect = 5e-20
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
G+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ T
Sbjct: 489 GEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCT 548
Query: 190 PGRLIDFLEKG---TTNLQRCTYLVL 258
PGR+ID L TNL RCTYLVL
Sbjct: 549 PGRMIDVLSANAGRVTNLHRCTYLVL 574
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/83 (45%), Positives = 58/83 (69%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
LDEADRM D+GFEPQ+ +II IRPDRQT+++SAT+P+ ++ LA L ++I +G
Sbjct: 574 LDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRS 633
Query: 435 LSANHNILQIVDICQEHEKENKL 503
+ A+ + QIV++ E K ++L
Sbjct: 634 VVAS-EVEQIVEVRPEESKFSRL 655
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 509 LLQEIGQ--SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQF 682
LL+ +G+ + + +T++FV+ + A+ + ++ + G+ + +HG K Q +R + +
Sbjct: 655 LLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDY 714
Query: 683 KEGRASILVATDVAARGLDVDGIQ 754
K G +L+AT V ARGLDV +Q
Sbjct: 715 KAGVFDVLIATSVVARGLDVKSLQ 738
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.8 bits (198), Expect = 2e-17
Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIR----PDRQTLMWSATWPKEVK 377
+ +G L + LDEADRMLDMGFEPQIR I+E +RQTLM+SAT+P++++
Sbjct: 320 IDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQ 379
Query: 378 KLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
LA D+L DY+ +++G + S + NI Q V ++ EK + L
Sbjct: 380 LLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYL 420
Score = 76.6 bits (180), Expect = 4e-15
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P L+LAPTREL QI + + F + S+VR V+GGA R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
L+D +++G +L +LVL
Sbjct: 316 LVDLIDRGRISLANIKFLVL 335
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L +I + P T+IFVETKR A+ ++ + +PA +HGD+TQ+ER L F+ G
Sbjct: 420 LLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSG 479
Query: 692 RASILVATDVAARGLDVDGI 751
R SI+VAT VA+RGLD+ +
Sbjct: 480 RTSIMVATAVASRGLDIPNV 499
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 2e-16
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPD------RQTLMWSATWPKE 371
+ G + V LDEADRMLD GFE IR II PD RQT+ +SATWP+
Sbjct: 300 INDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPES 358
Query: 372 VKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKENKLNVYCKK 521
V+ LA +L D ++I IGS +L+A+ NI QIV+I + KE L+ +K
Sbjct: 359 VRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRK 409
Score = 62.1 bits (144), Expect = 8e-11
Identities = 32/80 (40%), Positives = 47/80 (58%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P LV++PTRELA Q + + ++ V+GGAPK EQAR + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGR 295
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
L+D + G+ + + YLVL
Sbjct: 296 LLDLINDGSIDCSQVGYLVL 315
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K +IFV K++A + + R + V +HGD +Q R + L FK G+ +LVATDVAA
Sbjct: 419 KILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAA 477
Query: 728 RGLDVDGIQ 754
RGLD+ +Q
Sbjct: 478 RGLDIPKVQ 486
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 3e-15
Identities = 40/81 (49%), Positives = 50/81 (61%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
GP A+VLAPTRELAQQIQ F R V GG EQ+ + +G IV+ATPG
Sbjct: 325 GPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384
Query: 196 RLIDFLEKGTTNLQRCTYLVL 258
RL+D LE+ L +CTY+V+
Sbjct: 385 RLLDCLERRLFVLSQCTYVVM 405
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/80 (40%), Positives = 48/80 (60%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
++EI +S IIFV KR E I++ + GW AV +HG K+Q++R + Q +
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 692 RASILVATDVAARGLDVDGI 751
A ILVATD+A RG+D+ +
Sbjct: 566 TADILVATDIAGRGIDIPNV 585
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPD-------------------RQTLMWSATWPKEVK 377
+DEADRMLDMGFE + KI+ + RQT+M+SAT P V
Sbjct: 405 MDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVA 464
Query: 378 KLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKE 494
LA+ YL + + + IG++ A + Q V++ + K+
Sbjct: 465 NLAKSYLIEPVMLTIGNIG-QAVDRVEQRVEMISDDSKK 502
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 59.7 bits (138), Expect = 4e-10
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL+LAPTRELAQQIQ+V G V GG R+ L+ GV +V+ TPGR+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 205 DFLEK 219
D +++
Sbjct: 150 DMIQR 154
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF T+RK + ++ + + MHGD Q +R ++++F+ G + IL+ TD+ A
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 320 RGIDVQQV 327
Score = 52.8 bits (121), Expect = 5e-08
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
AV +F LDEAD ML GF+ QI I + + P Q ++ SAT P++V ++ ++ D I+I
Sbjct: 161 AVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI 220
Query: 417 NIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKV 533
+ +L+ I Q + E E E KL+ C + V
Sbjct: 221 LVKKDELTL-EGIKQFY-VAVEKE-EWKLDTLCDLYETV 256
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.4 bits (135), Expect = 1e-09
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 TRGDGPIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVE 174
TR G A+++APTREL QQI VA + + ++ + V GG K+ + + +GV
Sbjct: 212 TRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN 271
Query: 175 IVIATPGRLIDFLE 216
I+I TPGRL D LE
Sbjct: 272 ILIGTPGRLADHLE 285
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIR------------PDRQ-TLMWSATWPKEVKKLAEDY 395
LDE DR++DMGFE + KI+ + P R+ T++ SAT VK+L++
Sbjct: 300 LDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSA 359
Query: 396 LGDYIQI 416
L D + +
Sbjct: 360 LKDALYL 366
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRAS---ILVATDVAARGLDVDGI 751
+HG +QQ R L F S IL+ TDVAARGLD+ +
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNV 515
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.6 bits (133), Expect = 2e-09
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G IIF T + ++ +R G+ A+ +HG +Q R L +FK G S LVATDV
Sbjct: 285 GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDV 344
Query: 722 AARGLDV 742
AARGLD+
Sbjct: 345 AARGLDI 351
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A+VLAPTRELA QI + G + VR+ + GG QA L + +++ TPGRL+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 205 DFLE--KGTTNLQRCTYLVL 258
D LE KG +L+ YL++
Sbjct: 177 DHLENTKG-FSLKNLKYLIM 195
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 428
+DEADR+LDM F P I KI++ I +R+TL++SAT +V+KL L +++ + S
Sbjct: 195 MDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS 252
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/77 (38%), Positives = 38/77 (49%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 207
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 208 FLEKGTTNLQRCTYLVL 258
KG + CT V+
Sbjct: 176 LAGKGVADFSECTTFVM 192
Score = 49.2 bits (112), Expect = 6e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Frame = +3
Query: 213 GKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAED 392
GKG + F +DEAD++L F P I +++ +RQ ++SAT+P VK +
Sbjct: 178 GKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDK 237
Query: 393 YLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
+L +IN+ + + Q E +K + LN KL ++++
Sbjct: 238 HLNKPYEINL--MDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSII 286
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 56.8 bits (131), Expect = 3e-09
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
G AL+L PTRELA QI + A G +++ + GG Q+ DL + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 196 RLIDFL----EKGTTNLQRCTYLVL 258
RL D + E+ L+R +LV+
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVM 159
Score = 52.0 bits (119), Expect = 9e-08
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
IIFV R AE I +R +H + Q+ER L +F+ A ILVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 734 LDVDGIQ 754
LD+ +Q
Sbjct: 322 LDIPSVQ 328
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 56.8 bits (131), Expect = 3e-09
Identities = 21/68 (30%), Positives = 42/68 (61%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF ++RK + ++ +R + MHG+ Q+ER ++ F++G + +L+ TD+ A
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 322 RGIDVQQV 329
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL+L+PTRELA QIQ V G V+ GG + L+ G +V TPGR+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 205 DFLEKGTTNLQRCTYLVL 258
D + + + L+L
Sbjct: 152 DMIRRRNLRTRNVKMLIL 169
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
V + LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++ + + ++I
Sbjct: 164 VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.6 bits (128), Expect = 7e-09
Identities = 24/68 (35%), Positives = 42/68 (61%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IFV++ +A + R +R +P++C+HG Q+ER + FK+ I VATDV
Sbjct: 297 QVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFG 356
Query: 728 RGLDVDGI 751
RG+D++ +
Sbjct: 357 RGIDIERV 364
Score = 39.5 bits (88), Expect = 5e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +1
Query: 13 DGPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEI 177
DG ++ LVL TRELA QI+ A F + VR +GG + E +D + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 178 VIATPGRLIDFLEKGTTNLQRCTYLVL 258
V+ATPGRL + + + + VL
Sbjct: 177 VVATPGRLNALVREKILKVNSVKHFVL 203
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.2 bits (127), Expect = 9e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
+G ++++PTRELA QI VA + + V GGA +R +A L +GV +++ATP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 193 GRLIDFLE 216
GRL+D L+
Sbjct: 220 GRLLDHLQ 227
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K I+F+ + + ++ + P + +HG + QQ R ++F IL+ T+VAA
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 728 RGLDVDGI 751
RGLD+ +
Sbjct: 398 RGLDIPAV 405
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/45 (46%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLA 386
+DEADR+L++GFE ++R+I++ + +RQTL++SAT +V+ LA
Sbjct: 242 IDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+TIIF +K A + A +HG +Q++R L F++G+ + L+ATDVA+
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 728 RGLDVDGIQ 754
RG+D+ GI+
Sbjct: 566 RGIDIKGIE 574
Score = 48.8 bits (111), Expect = 8e-07
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 207
L+L PTRELA Q VA + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 208 FL 213
+
Sbjct: 394 HM 395
Score = 46.0 bits (104), Expect = 6e-06
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
+ I +DEADRML+ GF ++ +II+ RQT+++SAT +V L L +++
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVF 465
Query: 420 IGSLQLSANHNILQIVDICQEHE--KENKLNVYCKKL 524
+ + + +A + V + + E + L CK+L
Sbjct: 466 VDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKEL 502
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL+L+P RELA Q +V DF + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 205 DFLEKGTTNLQRCTYLV 255
+ L Y+V
Sbjct: 202 HLKVEMKLELSSIEYVV 218
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = +2
Query: 488 KRK*IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAE 667
KRK L + +S P + T++FV TK E +S + + G+ ++G Q+ R
Sbjct: 329 KRKRALELALKGSESGSPDS-TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLN 387
Query: 668 VLYQFKEGRASILVATDVAARGLDV 742
+ F+ G+ ++LV TDVA+RG+D+
Sbjct: 388 EINNFRLGKTNLLVVTDVASRGIDI 412
Score = 49.6 bits (113), Expect = 5e-07
Identities = 22/65 (33%), Positives = 40/65 (61%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 407
+L+++ DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ + A+ L D
Sbjct: 210 ELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDP 269
Query: 408 IQINI 422
+ + +
Sbjct: 270 VLVRL 274
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +3
Query: 234 TAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 386
+ + + LDEADR+LDMGF + I+ + RQT+++SAT K VK LA
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRY--GWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
KTI+F+ + ++ + RR G + +HG + Q R EV +F R +L TD+
Sbjct: 285 KTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
Query: 722 AARGLDVDGI 751
ARGLD +
Sbjct: 345 VARGLDFPAV 354
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
DG ALV++PTRELA Q + G + GG +E+ L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 193 GRLIDFLEK 219
GRL+ +++
Sbjct: 169 GRLLQHIDQ 177
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
ALV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLW 254
Query: 205 DFLEKG--TTNLQRCTYLVL 258
+ + T N ++ LVL
Sbjct: 255 SVINENNLTGNFKKIKCLVL 274
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
PG KT++F + I+ + P+ +H Q++R + L +FK +LV TD
Sbjct: 389 PG-KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 719 VAARGLDVDGI 751
VAARG+D+ +
Sbjct: 448 VAARGIDIPSV 458
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMWSATWPKEVKK 380
LDEADR+L ++ K++E + RQT ++SAT+ + +++
Sbjct: 274 LDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQ 319
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + K AE I+R + G C+ G+ +R ++ F+ G + +LV T+V A
Sbjct: 354 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 413
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 414 RGIDVSQV 421
Score = 45.6 bits (103), Expect = 8e-06
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +3
Query: 240 VHIFSLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
+ +F LDEAD MLD G Q +I + + Q +++SAT+ + V+K AE + + +I
Sbjct: 255 IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEI 314
Query: 417 NIGSLQLSANHNILQIVDICQEHEKENKLNV 509
+ + +LS I Q+ CQ +E+K NV
Sbjct: 315 RLKTEELSV-EGIKQLYMDCQ--SEEHKYNV 342
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P A+ LAP+RELA+QI V + G Y FG K + + +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMG--KYTEVKTAFG--IKDSVPKGAKIDAQIVIGTPGT 240
Query: 199 LIDFLEK 219
++D +++
Sbjct: 241 VMDLMKR 247
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/82 (28%), Positives = 47/82 (57%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKE 688
+L+++ + E + +IFV+ +A+ + + +HG+ Q +R E L +F++
Sbjct: 277 ILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRK 336
Query: 689 GRASILVATDVAARGLDVDGIQ 754
G +L+ATD+ ARG+D G++
Sbjct: 337 GEIWVLIATDLLARGIDFHGVK 358
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEDYLGDYIQI 416
V F +DEADR+ + GF Q I+ ++SAT P V++LA+ D I+I
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 417 NIG 425
+G
Sbjct: 250 IVG 252
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 201
A+++APTREL +QI + A + ++ + K +E+A L ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 202 IDFLEKG 222
+ ++ G
Sbjct: 178 VQAIQTG 184
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 201
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 202 IDFLE 216
D L+
Sbjct: 175 EDHLQ 179
Score = 42.3 bits (95), Expect = 7e-05
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRY-GWPAVCMHGDKTQQERAEVLYQFK 685
LLQ++ S P ++ I+F+ T + + + + P +H T +R + F+
Sbjct: 282 LLQQL-TSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 686 EGRASILVATDVAARGLDVDGI 751
+ ++ IL ATDV ARG+D I
Sbjct: 341 KCQSGILFATDVVARGMDFPNI 362
Score = 41.9 bits (94), Expect = 9e-05
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 249 FSLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEDYLG-DYIQIN 419
F LDEADR++DMGF I I E + + + L +SAT P +V + LG D+ IN
Sbjct: 192 FILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 359
+ I LDEAD ++DMGF+ ++ II Q+ R+T ++SAT
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWP--AVCMHGDKTQQERAEVLYQFKEG-RASILVATD 718
K I+F + E + Y P V +HG + Q R+ +FK+ + ++L TD
Sbjct: 258 KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTD 317
Query: 719 VAARGLDVDGI 751
+A+RGLD+ +
Sbjct: 318 IASRGLDIPNV 328
Score = 33.5 bits (73), Expect = 0.033
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GAPKREQARDLERGVE 174
AL++APTRELA QI V + G V + + G G + A E+
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 175 IVIATPGRLIDFL 213
+VI TPGRL + L
Sbjct: 135 VVIGTPGRLNEML 147
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 38.7 bits (86), Expect = 9e-04
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
G AL+L PTRELAQQ+ V + ++R V + Q L +IVIAT
Sbjct: 88 GIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIAT 147
Query: 190 PGRLIDFLEKGTTNLQRCTYLVL 258
P R + + G L + +LV+
Sbjct: 148 PSRCVVHVASGVLPLDKLKFLVI 170
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD ML G+ ++ + + Q+ + SAT K + L + + + + +
Sbjct: 170 IDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE 229
Query: 435 LSANHNILQIVDICQEHEK 491
A+ + Q V C E +K
Sbjct: 230 --ASGKLTQYVVKCSEQDK 246
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMH-----GDKTQQE-------RAEVLYQFKEG 691
+T+IFVE K A +S ++ P + H G Q E + + L++FK G
Sbjct: 363 RTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTG 422
Query: 692 RASILVATDVAARGLDV 742
+ ++L+AT VA G+DV
Sbjct: 423 KYNVLIATAVAEEGIDV 439
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 527 QSQEPGAKTIIFVETKRKAEPISRNIRRY----------GWPAVCMHGDKTQQERAEVLY 676
+ Q + +IFVE + AE I R + ++ G AV +Q+ + E +
Sbjct: 427 KEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVK 486
Query: 677 QFKEGRASILVATDVAARGLDV 742
QF++G + L+AT + GLD+
Sbjct: 487 QFQKGEVNTLIATSIGEEGLDI 508
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.044
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 192
+V+ PTREL Q+ + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 193 GRLIDFLEKGTT-NLQRCTYLVL 258
GRL+D + + +LQ Y+V+
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVI 291
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 647 TQQERAEVLYQFKEGRASILVATDVAARGLDVDGIQ 754
++ ER +++ +F G ++LV +D+ ARG+DV Q
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQ 507
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQI 323
+DEADR+LD F+ + ++ +I
Sbjct: 291 IDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 31.9 bits (69), Expect = 0.10
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 196 RLIDFLEKGTTNLQRCTYL--VLMRLIVCWIWDLNHKSEK--SLSKYAQT 333
RL+ ++ + NLQR +++ +L +L+ DL K LS+ QT
Sbjct: 150 RLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELSESLQT 199
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 650 QQERAEVLYQFKEGRASILVATDVAARGLDV 742
Q ++ E + QF+ G + LVAT + GLD+
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDI 547
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRR-YGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAAR 730
II+ ++ E ++ +R YG A H + ER + +++ G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 731 GLD 739
G+D
Sbjct: 806 GVD 808
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +2
Query: 536 EPGAKTIIFVETKRKAEPISRNIRR---YGWPAVCMH-GDKTQQERAEVLYQFK--EGRA 697
E + IIF TK+ E I R + + + V ++ GD + +ER F+ G+
Sbjct: 1413 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1472
Query: 698 SILVATDVAARGLDVDGIQ 754
I++AT G++ G++
Sbjct: 1473 RIMIATKAFGLGINYMGVR 1491
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +2
Query: 536 EPGAKTIIFVETKRKAEPISRNIRR---YGWPAVCMH-GDKTQQERAEVLYQFK--EGRA 697
E + IIF TK+ E I R + + + V ++ GD + +ER F+ G+
Sbjct: 1413 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1472
Query: 698 SILVATDVAARGLDVDGIQ 754
I++AT G++ G++
Sbjct: 1473 RIMIATKAFGLGINYMGVR 1491
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 721 NISCYKNTSTTFLELIQNFSSFLLSFIAMHTNSWPAISPDV 599
N+S +K ++ + L+ FS FL+ + ++N +S DV
Sbjct: 2302 NVSSFKGSTPSLWNLLNQFSKFLIEIASANSNIVYKLSYDV 2342
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 504 NVYCKKLDKVKNLVRKQ*FLLKPREKLSPYQGTSGDMAGQLFVCMAIKLNK 656
N + ++ K+KNL +K+ +KP E L P Q D + F+ A+ K
Sbjct: 117 NTFTSRIKKIKNLFKKEKKQVKP-EDLGPRQIILNDYSANHFLHNAVSTCK 166
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.6
Identities = 28/109 (25%), Positives = 53/109 (48%)
Frame = +3
Query: 219 GHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 398
GH+QLT +HI + +D D +R I+++ D Q S T + V+ A+D
Sbjct: 25 GHSQLTPIHIAAALLSDS--DSNGTTLLRTIVDKAGGDGQKFERSVT-SRLVRLPAQDPP 81
Query: 399 GDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
+ + ++ S +L N + LQ +++ + V+ K D +K+L+
Sbjct: 82 PEQVTLSPESAKLLRNAHELQKTQKDSYIAQDHFIAVFTKD-DTLKSLL 129
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 162
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 249 FSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT--WPKEVKKLAEDYLGDYIQINI 422
FS+ ++D F+PQI I Q +T+ WS W +++++ ED + N+
Sbjct: 391 FSIPNGPALVDTIFQPQIDIFISQELHYFKTVGWSLVDQWDQKLEE-KEDATECFFYKNV 449
Query: 423 GSLQLSANHNILQ 461
Q +A +N L+
Sbjct: 450 S--QNTAKNNFLE 460
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 312 IEQIRPDRQTLMWSATWPKEVKKLAED 392
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 76 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
A FG S + C G KR RD+ G + ++ PG
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPG 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,161
Number of Sequences: 5004
Number of extensions: 66425
Number of successful extensions: 291
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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