Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00011
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 145 4e-35
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 8e-17
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 9e-16
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 69 4e-12
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 66 4e-11
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 66 4e-11
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 62 5e-10
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 60 1e-09
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 60 3e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 3e-08
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 56 4e-08
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 55 7e-08
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 55 7e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 54 9e-08
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 54 1e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 54 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 51 9e-07
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 51 1e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 6e-06
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 48 8e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 48 1e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 44 1e-04
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 38 0.007
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 38 0.007
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10) 33 0.19
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 32 0.57
SB_14172| Best HMM Match : VHP (HMM E-Value=3.8) 32 0.57
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_7386| Best HMM Match : Helicase_C (HMM E-Value=0.086) 32 0.57
SB_47383| Best HMM Match : LON (HMM E-Value=1.3) 31 0.76
SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 30 2.3
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 3.1
SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 29 5.4
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 28 9.4
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 28 9.4
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 145 bits (351), Expect = 4e-35
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
LDEADRMLDMGFEPQIR II+QIRPDRQTLMWSATWPKEV+ LA D+L DY+ I +GSL
Sbjct: 212 LDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLG 271
Query: 435 LSANHNILQIVDICQEHEKENKLNVY 512
L+ANH ILQIVD+C++HEKE+ + +
Sbjct: 272 LTANHKILQIVDVCEDHEKEHNVGSF 297
Score = 123 bits (296), Expect = 2e-28
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK Q R+LERGVEI IAT
Sbjct: 130 GDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIAT 189
Query: 190 PGRLIDFLEKGTTNLQRCTYLVL 258
PGRLID LE TNL+RCTYLVL
Sbjct: 190 PGRLIDMLESRKTNLRRCTYLVL 212
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYG 616
+T+IF ETKR+A+ ++R +R G
Sbjct: 308 QTLIFTETKRRADELTRKLRSDG 330
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/82 (56%), Positives = 54/82 (65%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI L+ APTREL QQI A FG + VFGG K EQ++ L+ G EIV+AT
Sbjct: 588 GDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVAT 647
Query: 190 PGRLIDFLEKGTTNLQRCTYLV 255
PGRLID ++ TNL R TYLV
Sbjct: 648 PGRLIDHVKAKATNLHRVTYLV 669
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVA 724
+IFV K +E ++ N+R+ + +HGD Q ER++VL QFK+ ILVATDVA
Sbjct: 733 LIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVATDVA 789
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 4/103 (3%)
Frame = +3
Query: 207 FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEV 374
F+ KG L + LDEADRMLDMGFEP IR+I+E + + +RQTLM+SAT+P+E+
Sbjct: 852 FIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSATFPEEI 911
Query: 375 KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
++LA D+L DY+ + +G + +I Q V ++EK ++L
Sbjct: 912 QRLAGDFLNDYLFLTVGRVG-GTTSDIEQTVIEVTDNEKRDRL 953
Score = 75.8 bits (178), Expect = 4e-14
Identities = 32/69 (46%), Positives = 51/69 (73%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+T++FVE+KR A+ ++ + G+P +HGD+ QQER E L F++GR +L+AT+VAA
Sbjct: 964 RTLVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRKGRCPVLIATNVAA 1023
Query: 728 RGLDVDGIQ 754
RGLD+D ++
Sbjct: 1024 RGLDIDDVK 1032
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P A+ +APTRELA QI A F H + +R +GG Q R L+ G +++ TPGR
Sbjct: 789 PQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGR 848
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
L DF+EKG +L+ +L+L
Sbjct: 849 LTDFIEKGKVSLKGLQFLIL 868
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 84.6 bits (200), Expect = 8e-17
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 4/102 (3%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQ-IRPD---RQTLMWSATWPKEVK 377
+ +G L ++ LDEADRMLDMGFEPQIR+I++Q P RQTLM+SAT+PKE++
Sbjct: 990 MDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGIRQTLMFSATFPKEIQ 1049
Query: 378 KLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
LA D+L +YI + +G + S + NI Q V E +K + L
Sbjct: 1050 MLARDFLENYIFLAVGKVG-STSENITQKVVWVDEFDKRSFL 1090
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/84 (38%), Positives = 52/84 (61%)
Frame = +2
Query: 503 KCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQF 682
+ L ++ + P T++FVETK+ A+ + + + G+ +HGD++Q+ER E L F
Sbjct: 1087 RSFLLDLLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREEALRTF 1146
Query: 683 KEGRASILVATDVAARGLDVDGIQ 754
+ G ILVAT VAARGLD+ ++
Sbjct: 1147 RCGDTPILVATAVAARGLDIPNVK 1170
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 10 GDGPIALVLAPT-RELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 186
G G A L P + + DF + S R V+GGA Q R+L+R +++A
Sbjct: 922 GSGKTAAFLIPILSRIYMEGPPAPPDFSYRSLCRPCVVYGGADIGSQLRELDRNCHLLVA 981
Query: 187 TPGRLIDFLEKGTTNLQRCTYLVL 258
TPGRL+D +++G L +LVL
Sbjct: 982 TPGRLVDMMDRGRVGLDSIRFLVL 1005
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 81.0 bits (191), Expect = 9e-16
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
G IA+V+ PTRELA QI + F + +R CV+GG EQ +L+RG EI++ T
Sbjct: 142 GRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCT 201
Query: 190 PGRLIDFLEKG---TTNLQRCTYLVL 258
PGR+ID L TN QRCTYLVL
Sbjct: 202 PGRMIDMLTANNGRVTNCQRCTYLVL 227
Score = 70.5 bits (165), Expect = 1e-12
Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 13/106 (12%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKI--------IEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
LDEADRM DMGFEPQI KI I+ IRPDRQT+M+SAT+P++++ LA L I
Sbjct: 227 LDEADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQTVMFSATFPRQMEALARKILDKPI 286
Query: 411 QINIGSLQL---SANHNI-LQIVDICQEHEKENK-LNVYCKKLDKV 533
+I +G + N+ L + D E E E K + K+LD V
Sbjct: 287 EIQVGGRSVVCSDVEQNVALGLQDSDDEAEAEEKAVEEIDKRLDAV 332
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/78 (46%), Positives = 45/78 (57%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
ALVLAPTRELAQQIQ+V G +V+ GG RE LE GV +V+ TPGR+
Sbjct: 162 ALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVF 221
Query: 205 DFLEKGTTNLQRCTYLVL 258
D + +G N + VL
Sbjct: 222 DMINRGVLNTRDIKLFVL 239
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/65 (33%), Positives = 40/65 (61%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF T+RK + ++ + MHGD +Q+ER ++ +F+ G + +L+ TD+ A
Sbjct: 332 QAVIFANTRRKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLLA 391
Query: 728 RGLDV 742
RG+DV
Sbjct: 392 RGIDV 396
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
+ +F LDEAD ML GF+ QI + ++ Q ++ SAT P +V ++ ++ D ++I
Sbjct: 234 IKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTDVLEVTNKFMRDVVRI 292
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = +1
Query: 7 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 186
RG P LV+APTRELA+Q+ + S + C++GG P Q + G+++++
Sbjct: 144 RGRAPKVLVMAPTRELAKQVGNEFENL--KSNLEVYCIYGGMPYEPQENAINSGLDVLVG 201
Query: 187 TPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR++DF+ +GT +L + ++VL
Sbjct: 202 TPGRILDFMRQGTLDLSKLKHVVL 225
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/68 (44%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+T+IF +TK++A ++ N V +HGD Q++R L F+EG+ LVATDVAA
Sbjct: 307 RTMIFAQTKKEANELALNSVLKQETQV-LHGDIPQKQREVTLKSFREGKFRCLVATDVAA 365
Query: 728 RGLDVDGI 751
RGLD+ I
Sbjct: 366 RGLDIPEI 373
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +3
Query: 207 FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKII----EQIRPDR-QTLMWSATWPKE 371
F+ +G L+ + LDE DRMLDMGF + +++ + R D+ QTL++SAT P
Sbjct: 209 FMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKPQTLLFSATLPPW 268
Query: 372 VKKLAEDYL 398
A+ Y+
Sbjct: 269 AVNTAKKYM 277
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/70 (44%), Positives = 49/70 (70%)
Frame = +3
Query: 282 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 461
MGFEP+I+KI+ IRPDRQT+M SATWP V+++A+ Y+ D +++ +G L L N+++
Sbjct: 1 MGFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYMTDPVRVFVGCLDL----NVIE 56
Query: 462 IVDICQEHEK 491
++ EK
Sbjct: 57 FIEGMAPGEK 66
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 650 QQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
Q +R + L FK G A IL+ATDVA+RGLD+ I
Sbjct: 78 QYDREQALDDFKTGLARILIATDVASRGLDIKDI 111
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 68.1 bits (159), Expect = 7e-12
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Frame = +3
Query: 207 FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQ----IRPDRQTLMWSATWPKEV 374
F+ + L ++ LDEADRMLD+GF P I K+IE+ + RQTLM+SAT+P E+
Sbjct: 616 FVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESRQTLMFSATFPDEI 675
Query: 375 KKLAEDYL-GDYIQINIGSLQLSANHNILQIVDICQEHEKENKLN 506
+ LA +L DY+ + +G + N +I Q V EK +KL+
Sbjct: 676 QHLAGSFLKPDYLFLAVGRVG-GTNLDITQHVITVNGSEKRDKLH 719
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/80 (40%), Positives = 45/80 (56%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P+AL +APTRELA+QI A F + ++ +GG QA LERG ++ TPGR
Sbjct: 553 PLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYGGVSVPYQASQLERGCHFLVGTPGR 612
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
L DF+ + L +L+L
Sbjct: 613 LQDFVSREKIYLGSIQHLIL 632
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/86 (34%), Positives = 54/86 (62%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
LDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L + +N+G
Sbjct: 22 LDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 81
Query: 435 LSANHNILQIVDICQEHEKENKLNVY 512
+A+ +++Q++ ++ + ++ Y
Sbjct: 82 -AASLDVIQVLIFAEKKSDVDDIHEY 106
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF E K + I + G AV +HGDK+Q+ER + +F +G +LVATDVA+
Sbjct: 89 QVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREFHQGNKDVLVATDVAS 148
Query: 728 RGLDVDGIQ 754
+GLD IQ
Sbjct: 149 KGLDFPDIQ 157
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/86 (34%), Positives = 54/86 (62%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
LDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L + +N+G
Sbjct: 22 LDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 81
Query: 435 LSANHNILQIVDICQEHEKENKLNVY 512
+A+ +++Q++ ++ + ++ Y
Sbjct: 82 -AASLDVIQVLIFAEKKSDVDDIHEY 106
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF E K + I + G AV +HGDK+Q+ER + +F +G +LVATDVA+
Sbjct: 89 QVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREFHQGNKDVLVATDVAS 148
Query: 728 RGLDVDGIQ 754
+GLD IQ
Sbjct: 149 KGLDFPDIQ 157
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF TKRK + ++ +R + MHGD Q+ER ++ F+ G++ +L++TDV A
Sbjct: 238 QAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWA 297
Query: 728 RGLDVDGI 751
RGLDV +
Sbjct: 298 RGLDVQQV 305
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/80 (41%), Positives = 41/80 (51%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P ALVL+PTRELA QIQ+V G V+ GG E R L+ G IV TPGR
Sbjct: 66 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 125
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
+ D + + + LVL
Sbjct: 126 VFDMIRRRNLRTRSIKMLVL 145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
++ + LDEAD ML+ GF+ QI + + P Q ++ SAT P E+ ++ ++ D I+I
Sbjct: 139 SIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTSKFMTDPIRI 198
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = +3
Query: 234 TAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
T++ I LDEADR+LDMGF P + IIE + +RQTL++SAT + VK LA L Y+
Sbjct: 195 TSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLLYSATQTRSVKDLARLSLQSYV 253
Score = 48.8 bits (111), Expect = 5e-06
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 TRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP-KREQARDLERGVEIV 180
T DG ALV++PTRELA Q +V G+ + + GG K EQ R ++ IV
Sbjct: 118 TSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK--TNIV 175
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVLMRL 267
+ TPGRL+ +++ T N CT L ++ L
Sbjct: 176 VCTPGRLLQHMDE-TPNFD-CTSLQILVL 202
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 545 AKTIIFVETKRKAEPISRNIRRY--GWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
+K ++FV + ++ + I RR G P + ++G + Q +R + +F + +L ATD
Sbjct: 274 SKILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQKQLKRVAIYDEFCKKTQCVLFATD 333
Query: 719 VAARGL 736
+AARGL
Sbjct: 334 IAARGL 339
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
V I LDEADRMLDMGF IR+++ ++ RQ L++SAT+ ++K LAE L + ++I
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIE 63
Query: 420 IGSLQLSANHNILQ 461
+ + + +A+ +LQ
Sbjct: 64 V-ARRNTASDQVLQ 76
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
++F++TK A + + G A +HG+ TQ +R E L +FK G ILVATD+AARG
Sbjct: 12 LVFLQTKWMAHKLRIVLGLMGLNADELHGNLTQLQRLEALQKFKNGEVDILVATDLAARG 71
Query: 734 LDVDGIQ 754
LD+ G++
Sbjct: 72 LDITGVK 78
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
G A+VL PTRELA QI G ++ + GG +QA L +VIATPG
Sbjct: 75 GIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPG 134
Query: 196 RLIDFLEK-GTTNLQRCTYLVL 258
RL D ++ T NL++ +LVL
Sbjct: 135 RLADHIKSTDTLNLKKIQFLVL 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = +2
Query: 506 CLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFK 685
C L + + + I+F T + + + + G V +H +Q ER L +FK
Sbjct: 235 CYLVHLLRENDDNQSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFK 294
Query: 686 EGRASILVATDVAARGLDVDGIQ 754
G ILVATDVA+RGLD+ ++
Sbjct: 295 SGTIKILVATDVASRGLDIPQVE 317
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 359
L + LDEADR+LD F ++ I + + RQTL++SAT
Sbjct: 148 LKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSAT 190
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL+L PTRELA QI + G V+ + GG QA L + I+IATPGRLI
Sbjct: 35 ALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLI 94
Query: 205 DFLE--KGTTNLQRCTYLVL 258
D LE KG +L+ YLV+
Sbjct: 95 DHLENTKG-FSLRTLKYLVM 113
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/97 (29%), Positives = 55/97 (56%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD++L M F+ + +II+ + +RQ L++SAT+P V+ E +L +IN+ +
Sbjct: 202 MDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDFKEKHLRKPYEINL--MD 259
Query: 435 LSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
H + Q +E +K + LN +KL ++++
Sbjct: 260 ELTLHGVTQYYAFVEEKQKVHCLNTLFQKLQINQSII 296
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-------VEIVI 183
ALVL PTRELA Q Q+ + G + GG ++ L V +++
Sbjct: 118 ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIV 177
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
ATPGR++D ++K ++ +C LV+
Sbjct: 178 ATPGRVLDLMKKKLADMSKCQMLVM 202
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/97 (29%), Positives = 55/97 (56%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD++L M F+ + +II+ + +RQ L++SAT+P V+ E +L +IN+ +
Sbjct: 202 MDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDFKEKHLRKPYEINL--MD 259
Query: 435 LSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
H + Q +E +K + LN +KL ++++
Sbjct: 260 ELTLHGVTQYYAFVEEKQKVHCLNTLFQKLQINQSII 296
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-------VEIVI 183
ALVL PTRELA Q Q+ + G + GG ++ L V +++
Sbjct: 118 ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIV 177
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
ATPGR++D ++K ++ +C LV+
Sbjct: 178 ATPGRVLDLMKKKLADMSKCQMLVM 202
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 54.4 bits (125), Expect = 9e-08
Identities = 28/83 (33%), Positives = 50/83 (60%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DE D ML +GFE Q+++I+E++ RQT+++SAT P ++ +A L + I+ GS
Sbjct: 285 VDEVDTMLQLGFEQQVQQILERLSNRRQTMLFSATIPPSIEAMASRLLNAPVFISAGSPS 344
Query: 435 LSANHNILQIVDICQEHEKENKL 503
L + Q++ +E K+ +L
Sbjct: 345 LPTK-AVKQLILWVEEKSKKKQL 366
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 160 ERGVEIVIATPGRLIDFLEKGTTNL 234
E GV++++ATPGR+++ + + +L
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDL 277
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P A ++ P RELA QI + A H + R+ + GG ++ DLE V++++ATPG
Sbjct: 456 PRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGT 515
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
L+ + +K T+LV+
Sbjct: 516 LLKYRQKDRLFFSDLTHLVI 535
Score = 32.3 bits (70), Expect(2) = 0.014
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 638 GDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
G+ + R E +F+ A ILV TD+A+RGLD +
Sbjct: 728 GNSGTRIRCERFEKFQNKTADILVCTDIASRGLDTSDV 765
Score = 23.8 bits (49), Expect(2) = 0.014
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +2
Query: 530 SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGD 643
S+ PG +TI+F + + ++R++ ++ + +HG+
Sbjct: 651 SKSPG-QTIVFCNSASSCDWLARHLEQHNLSLIRLHGN 687
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPD---RQTLMWSATWPKEVKKLAEDYLGDYIQINIG 425
+DE DRML MG E Q+RKI+ RQTL+WSAT P+ +++LA + + I I +G
Sbjct: 239 MDEPDRMLGMGMEEQLRKIVGLATGTSRARQTLLWSATLPESLERLARSAVLNPITIQVG 298
Query: 426 SLQLSANHNILQIVDICQEHEKENKL 503
L A ++ Q V ++K KL
Sbjct: 299 PGGLIA-PSVQQNVVFLYHYQKPQKL 323
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/67 (32%), Positives = 41/67 (61%)
Frame = +2
Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
P I+F + + + ++ +++ + A +H +K Q R +++ F++G+ ILVATD
Sbjct: 331 PYPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVATD 390
Query: 719 VAARGLD 739
VA+RGLD
Sbjct: 391 VASRGLD 397
Score = 44.8 bits (101), Expect = 8e-05
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQI---------------------QQVAADFGH-TSYVRNTCVF 123
GD P+AL+L PTREL QQ+ Q V D T+ + V
Sbjct: 143 GDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPGPSNQSVIYDTQQFTARYKAVAVC 202
Query: 124 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 258
GG P Q L G ++V+ATPGRL+D L + TYLV+
Sbjct: 203 GGVPVSTQTIALREGADVVVATPGRLLD--------LYKITYLVM 239
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/87 (34%), Positives = 48/87 (55%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
+G ++++PTREL+ Q VA D + GG ++ +A L++GV ++IATP
Sbjct: 643 NGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNLLIATP 702
Query: 193 GRLIDFLEKGTTNLQRCTYLVLMRLIV 273
GRL+D L+ N Q Y L L++
Sbjct: 703 GRLLDHLQ----NTQGFLYKNLQCLVI 725
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/45 (48%), Positives = 35/45 (77%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
+DEADR+L++GFE ++R+II + RQT+++SAT K V+ LA+
Sbjct: 725 IDEADRILEIGFEEEMRQIIRILPSKRQTVLFSATQTKNVEDLAK 769
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K ++F + + S + P + +HG + QQ+R ++F ++ IL+ TDVAA
Sbjct: 820 KVMVFFSSCNSVKYHSELLNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLCTDVAA 879
Query: 728 RGLDV 742
RGLD+
Sbjct: 880 RGLDI 884
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 51.2 bits (117), Expect = 9e-07
Identities = 29/61 (47%), Positives = 34/61 (55%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P ALVL+PTRELA QIQ+V G V+ GG E R L+ G IV TPGR
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 63
Query: 199 L 201
+
Sbjct: 64 V 64
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ IIFV++ ++ +S + + +PA+C+H Q+ER QFK +LVAT++
Sbjct: 337 QVIIFVKSVQRCTALSHLLLKQNFPAICIHRGMKQEERLARYQQFKNFEKRMLVATNLFG 396
Query: 728 RGLDVDGI 751
RG+D++ +
Sbjct: 397 RGMDIERV 404
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +1
Query: 13 DGPIA-LVLAPTRELAQQIQQVAADF-GHTSYVRNTCVFGGAPKREQARDLERGV-EIVI 183
DG ++ LV+ TRELA QI + F + S ++ FGG ++ + L+ IV+
Sbjct: 113 DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVV 172
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR++ + T NL+ + +L
Sbjct: 173 GTPGRILALTREKTLNLKHAKHFIL 197
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 201
+AL++APTRELA Q++ + V+ + GG +Q R L++ EIV+ATPGRL
Sbjct: 220 LALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRL 279
Query: 202 IDFLEKGTTN 231
+ + + T+
Sbjct: 280 WELISQVFTH 289
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +2
Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
PG +T++F T ++ +R + +H Q++R + L +FK +L+ATD
Sbjct: 456 PG-RTLVFANTIDCVRRLTSILRLVQLNPLPLHASMQQRQRLKNLDRFKASNTGLLLATD 514
Query: 719 VAARGLDVDGIQ 754
VAARGLD+ I+
Sbjct: 515 VAARGLDIANIE 526
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/66 (30%), Positives = 40/66 (60%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
+IFV++K +A+ + + G +H D+TQ +R ++ F+ G+ +L+AT++ RG
Sbjct: 387 LIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRG 446
Query: 734 LDVDGI 751
+D G+
Sbjct: 447 IDFKGV 452
Score = 31.9 bits (69), Expect = 0.57
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGGAPKREQARDLERGVEI 177
G + G A+V++PTRELAQQI + R + A + +I
Sbjct: 200 GPKKSGFRAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKANASTNTFGAKSSKRFDI 259
Query: 178 VIATPGRLIDFL--EKGTTNLQRCTYLVL 258
++ TP RL+ L E L +L+L
Sbjct: 260 LVTTPNRLVHLLTQEPPGIELHNVEWLIL 288
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMG---FEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLAEDY 395
+L V LDEAD++ + G F QI I + +PD ++SAT +++ A +
Sbjct: 279 ELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHRGLFSATLSNGIEEWAGLH 338
Query: 396 LGDYIQINIG 425
L +++++ +G
Sbjct: 339 LDNHVRVTVG 348
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/66 (30%), Positives = 41/66 (62%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
++F T+R A ++ + + G + G+ T ++R VL +F+ G+ +L+ T+V+ARG
Sbjct: 348 VVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERFRLGKEKLLITTNVSARG 407
Query: 734 LDVDGI 751
+DV+ +
Sbjct: 408 IDVEQV 413
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFG-HTSYVR-NTCVFGGA-PKREQARDLERGVEIVIAT 189
P + L+PT ELA+Q +VA G H +++ N V G P+ ++ D I+I T
Sbjct: 174 PQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQFPRGQKCTD-----HIIIGT 228
Query: 190 PGRLIDFLEK 219
PG L+D++ K
Sbjct: 229 PGTLLDWIRK 238
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 138
GP AL+LAPTRELAQQI++ FG +R V GGA +
Sbjct: 178 GPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGADR 218
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K ++ + K PI + + + A +HG + Q++R L K G ILVATDVA
Sbjct: 286 KKLLELLNKDLEPPIIIFVNQKKFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAG 345
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 346 RGIDIKDV 353
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 24/69 (34%)
Frame = +3
Query: 264 ADRMLDMGFEPQIRKIIE-----QIRPD-------------------RQTLMWSATWPKE 371
ADRM+DMGFEP+++KI+E ++PD RQT+M++AT P +
Sbjct: 216 ADRMIDMGFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQ 275
Query: 372 VKKLAEDYL 398
V++LA++YL
Sbjct: 276 VERLAKNYL 284
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD--YI 410
+V +F LDEAD++LD F+ QI I + ++Q + +SAT+P+ + + Y+ + ++
Sbjct: 155 SVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAFSATYPEVLANHLKKYMTEPTFV 214
Query: 411 QIN 419
++N
Sbjct: 215 RLN 217
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 587 PISRNIRRYGWPAV--CMHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
P + + R+ AV C G +TQ +R E + + K IL++TD+ ARG+D + +
Sbjct: 227 PSTPDFHRFSLNAVSCCTAGSQTQAKRLEAMEKLKSFHCRILISTDLTARGIDAENV 283
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFGHTSYVRNTC-VFGGAPKREQARDLERGVEIVIATPGRLI 204
++L PTRE+A Q++ V G Y C VF G E+ + + I + TPGR+
Sbjct: 85 IILTPTREIAVQVKDVICAIG-CHYDGLACKVFIGGISLEEDKKALKSCHIAVGTPGRVK 143
Query: 205 DFLEK 219
+E+
Sbjct: 144 YLIEQ 148
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +1
Query: 13 DGPIA-LVLAPTRELAQQIQQVAADF-GHTSYVRNTCVFGGAPKREQARDLERGV-EIVI 183
DG ++ LV+ TRELA QI + F + S ++ FGG ++ + L+ IV+
Sbjct: 113 DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVV 172
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR++ + T NL+ + +L
Sbjct: 173 GTPGRILALTREKTLNLKHAKHFIL 197
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 109 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 222
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADF-GHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
+GP+ L+L + ++ V D + R +FGG + ++ L G E+++AT
Sbjct: 262 NGPLVLILCTNWQNTARVYGVCEDLIRNRRRTRVQMIFGGGAEEDRIVPLINGCEVLVAT 321
Query: 190 PGRLIDFLEKGTTNLQRCTYLV 255
P + L++ T+L R ++V
Sbjct: 322 PPCFLRMLKRCYTSLDRLCHVV 343
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +3
Query: 282 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 461
MGFE I I+ + R+T ++SAT EV+ L L + +++ + +L+ N+ +
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPVRVTVRE-KLTKTKNVQR 59
Query: 462 IVD-------ICQEHEKENKLNVYCKKLDKVKNLV 545
IC+ HEK ++L + K KN+V
Sbjct: 60 TPSTLQNFYLICRSHEKFSQLVAFLKARKDKKNMV 94
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 626 VCMHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
+ +HG K + R ++ F++ + ILV TDV ARG+D+
Sbjct: 119 MALHG-KMKSNRHKIFDSFRKLESGILVCTDVMARGVDI 156
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 638 GDKTQQERAEVLYQFKEG-RASILVATDVAARGLDVD 745
G TQ+E+ EV+ +F+ G +I++AT VA GLD+D
Sbjct: 597 GGMTQREQEEVIAKFRAGSECNIIIATTVAEEGLDID 633
>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 36.7 bits (81), Expect = 0.020
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Frame = +2
Query: 467 RYLSRT*KRK*-IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRY-------GWP 622
+YLS + K K L+ EI + ++ G KTII+ +T ++ + +R G P
Sbjct: 142 KYLSNSMDAKESFKWLVNEINERKDGGDKTIIYCQTIKQCSLVYGTLRSMLIELVANGKP 201
Query: 623 AVCM-HGDKTQQERAEVLYQFK--EGRASILVATDVAARGLDVDGI 751
+ M H ++ + +L FK +G +LVAT G+D G+
Sbjct: 202 KLEMLHSCTPKENKDAILESFKRLDGHVQVLVATIAFGMGIDCKGV 247
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 647 TQQERAEVLYQFKEGRASILVATDVAARGLDV 742
+QQE+ ++ +FK+G +IL+AT VA GLD+
Sbjct: 983 SQQEQELIIEEFKKGVVNILIATSVAEEGLDI 1014
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 35.9 bits (79), Expect = 0.035
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL+L+PTRELA Q Q+ + G + ++++ + GG + V+ATPGR +
Sbjct: 354 ALILSPTRELALQTQKFIKELGRFTGLKSSVILGG--------------DSVVATPGRFL 399
Query: 205 DFLEKGTTNLQRCTYLV 255
+ + L Y+V
Sbjct: 400 HVVMEMELKLSSVEYVV 416
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 677 QFKEGRASILVATDVAARGLDV 742
+F+ + ++V TDVAARG+D+
Sbjct: 520 KFQHKKTMVMVVTDVAARGIDI 541
>SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10)
Length = 435
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Frame = +2
Query: 467 RYLSRT*KRK*-IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRY-------GWP 622
+YLS + K + L+ +I + ++ G KTII+ +T ++ + +R G P
Sbjct: 173 KYLSNSMDAKESFEWLVNKINERKDGGDKTIIYCQTIKQCSLVYGTLRSMLIELVANGKP 232
Query: 623 AVCM-HGDKTQQERAEVLYQFK--EGRASILVATDVAARGLDVDGI 751
+ M H ++ + +L FK +G +LVAT G+D G+
Sbjct: 233 KLEMLHSCTPKENKDAILESFKRLDGHVQVLVATIAFGMGIDCKGV 278
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 154 DLERGVEIVIATPGRLIDFL 213
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 31.9 bits (69), Expect = 0.57
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 10 GDGPIALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQ-ARDLERGVEIVI 183
G G +++ PTRELA Q + +V+ G S V + ++E+ +D IVI
Sbjct: 223 GRGYGTIIVVPTRELASQMLYEVSRLLGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVI 282
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TP RL + +++ QR +V+
Sbjct: 283 GTPKRLWEIVQEHEHLFQRTKRIVI 307
>SB_14172| Best HMM Match : VHP (HMM E-Value=3.8)
Length = 83
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 392 ILSKFLYFFGPSS*PHQSLSVWAYLLNDFSDLWFKSHIQHTISLI-KTKYVHRCKLVVPF 216
+L F Y P+ + +W +DF +W K + + L KTK + K V
Sbjct: 4 VLLPFFYNQLPTLTAQEFFDIWVKFTSDFKVIWKKEQQRISKQLYEKTKKKLKEKQVENI 63
Query: 215 SKKSINLPGVAMTIS 171
SKK I++ G+ + I+
Sbjct: 64 SKKPISISGLKLKIA 78
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 530 SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILV 709
S E II+ T+ + ++ + R G A H +R +V ++ EG+ +++
Sbjct: 244 SGEAKGSGIIYCRTRDACQEVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWMEGKVAVIC 303
Query: 710 ATDVAARGLD 739
AT G+D
Sbjct: 304 ATISFGMGVD 313
>SB_7386| Best HMM Match : Helicase_C (HMM E-Value=0.086)
Length = 100
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 530 SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILV 709
S E II+ T+ + ++ + R G A H +R +V ++ EG+ +++
Sbjct: 26 SGEAKGSGIIYCRTRDACQEVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWMEGKVAVIC 85
Query: 710 ATDVAARGLD 739
AT G+D
Sbjct: 86 ATISFGMGVD 95
>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
Length = 1528
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3
Query: 335 SVWAYLLNDFSDLWFKSHIQHTISLIKTKYVHRCKLVVPFSKKS 204
S + Y L++F DL FK+ +T + TK+ + C+L+V S++S
Sbjct: 411 SQYCYTLDEFEDLTFKT--SNTGCMYLTKFFNYCQLIVDKSQES 452
>SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 294 PQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 458
P I K++E + W TW K +KL Y G+ + G +HN+L
Sbjct: 263 PCISKVVELRDQEFVIKWWKGTWLKSWEKLPSQYAGNSCVLFRGQYCQYRSHNLL 317
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -1
Query: 739 IKPSSCN---ISCYKNTSTTFLELIQNFSSFLLSFIAM 635
+ P CN ++ YKN ST F+E I N S L M
Sbjct: 238 LSPGGCNCHLVTIYKNHSTLFIEAIPNIQSQRLGIFLM 275
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQ 338
++ + LDEAD ML+ GF+ QI + + P Q
Sbjct: 35 SIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +2
Query: 524 GQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASI 703
G PG K KRK +P+ + W A H + +R +V +F G
Sbjct: 788 GSDVTPGKKG---ANKKRKKQPVRAPL---SWEAESYHAGMSAAQRRKVQKRFMSGELRA 841
Query: 704 LVATDVAARGLDVDGIQ 754
+ AT GLD ++
Sbjct: 842 VAATVAFGMGLDKSDVR 858
>SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMG-FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 386
L KG+ L H+F L + R +D G + PQ IR LM T K +L
Sbjct: 130 LVKGNTGLELCHLFDLSKPQRSIDKGVYHPQATSSARAIRV--LNLMLDIT-SKHKHRLG 186
Query: 387 EDYLGDYIQINIG-SLQLSANHNILQIV 467
+ Y + Q+++ S+ S + ++ Q V
Sbjct: 187 QRYTRLFNQLSVSQSVSQSVSQSVSQSV 214
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 647 TQQERAEVLYQFKEGRASILVATDVAARGLDV 742
T+QE+ VL F++ + ++LVAT V GLDV
Sbjct: 131 TKQEK--VLKMFRKHQINLLVATSVVEEGLDV 160
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIR 326
LDEAD+M+D F R+++E I+
Sbjct: 388 LDEADKMIDAYFREMQRRLMEDIK 411
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVL 673
G II+ +++ AE ++ + G A C H D + R++V+
Sbjct: 313 GDSGIIYCFSRKDAEQVAIEMSSRGIKAACYHADMPPESRSQVV 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,364,267
Number of Sequences: 59808
Number of extensions: 493544
Number of successful extensions: 1357
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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