Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00011
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       74   1e-15
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 74.1 bits (174), Expect = 1e-15
 Identities = 41/102 (40%), Positives = 60/102 (58%)
 Frame = +2

Query: 446 SQHSSNCRYLSRT*KRK*IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPA 625
           S    N   ++R  K+  +K +L+    S   G  T++FVE K+KA+ I+  +    +P 
Sbjct: 420 SDVEQNFYEVARNKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPT 478

Query: 626 VCMHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
             +HGD+ Q++R E L  FK GR SILVAT VAARGLD+  +
Sbjct: 479 TSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNV 520



 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
 Frame = +3

Query: 207 FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKII--EQIRP--DRQTLMWSATWPKEV 374
           F+ KG  + ++V    LDEADRMLDMGF P I K++  E + P  +RQTLM+SAT+P EV
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEV 396

Query: 375 KKLAEDYLGDYIQINIG 425
           + LA  +L +Y+ + +G
Sbjct: 397 QHLARRFLNNYLFLAVG 413



 Score = 64.5 bits (150), Expect = 1e-12
 Identities = 31/80 (38%), Positives = 43/80 (53%)
 Frame = +1

Query: 19  PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
           P  ++++PTREL  QI Q    F   S ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 199 LIDFLEKGTTNLQRCTYLVL 258
           L+DF+EKG        +LVL
Sbjct: 334 LLDFVEKGRVKFSSVQFLVL 353


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 566 ETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAE 667
           E ++K+    R  R+YG  +     D+T++ER++
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,150
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)