Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00010
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 28 1.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.7
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 27 2.7
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 27 2.7
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 27 3.5
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 27 3.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.7
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 26 4.7
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 6.2
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 6.2
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 8.2
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 185 KTVEKFAATLSDDVKKDPKKIEAGSKSSVKVQRTKKI 295
KTV+ T K + +AGS SV ++RTK++
Sbjct: 46 KTVDHAGTTFISSTSKRGRSTKAGSVHSVPMKRTKRV 82
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 173 EVCVKTVEKFAATLSDDVKKDPKKIEAGSKSSVKVQRTKKI 295
E+ K+ E ++ + K+ P+K + KSS KVQ+ K+
Sbjct: 14 ELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKV 54
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 498 EEDSNDWDEVCDGCIEKTDFIKRIEELKPKY 590
E+ S D G I K D +KRIEE + ++
Sbjct: 138 EQASKSGDTSTSGAISKNDILKRIEEDRERH 168
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 373 SMPADKICEKLKKKDAQICDLRFDKQIDLN 462
S+P K+ +K + + QICD +D QIDL+
Sbjct: 175 SLPDKKLIDKYYQLNEQICD--YDVQIDLD 202
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 41 YIEVSKFITHEFKYSSKMFKFSLFHLLFLATAVQVVLSLREGDCEVCVK---TVEKFAAT 211
Y+++SK I H +K + +F+ +F A Q + + ++ ++ T+
Sbjct: 70 YMKLSKVIVHPYK-DANVFEEHGIQDIFAALRDQTAAIASDSE-QISIQLPGTIINILEL 127
Query: 212 LSDDVKKDPKKIEAGSKSSVKVQRTKKID 298
L +D+++ KKI A VKV ++ +
Sbjct: 128 LREDLREHCKKIAAEGTKGVKVVEKQRAE 156
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 212 LSDDVKKDPKKIEAGSKSSVKVQRTK 289
L DD KDP KIEA + V+ +R +
Sbjct: 342 LGDDAIKDPTKIEAEVRKQVEERRLR 367
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 352 LSKPLSWSMPADKICEKLKKKDAQICDL 435
LS PL WS+ ++ E LKKKD + +L
Sbjct: 1153 LSMPL-WSLTYERYVELLKKKDEVMAEL 1179
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +1
Query: 262 KFCKGSKNKENRFCYYLGGLEESATGILGELS---KPLSWSMPADKICEKLKKKDAQICD 432
+ S + +NR+ YY L E + ILG + +P MP + E +K D
Sbjct: 90 RISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKSKRDSTD 149
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 510 NDWDEVCDGC 539
+DWD+ CDGC
Sbjct: 340 DDWDDSCDGC 349
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 11 YVVLH*HSQFYIEVSKFITHEFKYSSKMFKFSLFHLLFLATAVQVVLSLREGDCEVCVKT 190
+VVL + ++I F+ K+ +++L L A+ + +L DC T
Sbjct: 304 FVVLQARPAHLVSNIQYI-QRFRSPEKLTGEVMYYLSTLMGAMSFIETL---DCSSLTIT 359
Query: 191 VEKFAATLSDDVKK-DPKKIEAGSKSSVKV 277
E+F A + +KK + +K+ S+S V
Sbjct: 360 EEEFNAQIEKSIKKMEERKLSEKSESKTAV 389
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 230 SSHHLIAWRQTSLQFSHTLR--NHLLEVIGPPAQP 132
+++++ AW F TL+ NHL ++ PP+ P
Sbjct: 142 NANYVKAWNLRKDIFDETLKQMNHLQSILHPPSNP 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,465
Number of Sequences: 5004
Number of extensions: 54896
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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