Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00010
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0411 + 3670758-3672365                                           33   0.23 
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    30   2.1  
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    29   3.7  
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040...    29   4.9  
08_02_0459 + 17420156-17420976,17422291-17424199                       28   8.5  

>08_01_0411 + 3670758-3672365
          Length = 535

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 301 CYYLGGLEESATGILGELSKPLSWSMPADKICEKLKKKDAQICDLRF 441
           CY   G    A  +   + KP  W MP +K    +    +Q+ DLRF
Sbjct: 261 CYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRF 307


>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
            30922078-30922161,30922258-30922344,30922431-30922501,
            30922648-30922702,30923374-30923509,30925009-30925103,
            30925203-30925357,30925435-30925543,30925761-30925817,
            30925913-30926027,30926177-30926264,30926738-30927501,
            30927600-30927688,30928315-30928422,30928550-30928657,
            30928887-30928977,30929235-30929287,30929557-30929712,
            30930763-30930825,30931491-30931535,30932075-30932130,
            30933051-30933132,30933238-30933354,30933428-30933530,
            30933912-30934062,30934180-30934417,30934564-30934764,
            30934850-30934935,30935036-30935135
          Length = 1347

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 141  RWSYHFEKVIAKCV*KL*RSLPPRYQMM*RKTLKKSRQ-VQKVL*RFKEQRK 293
            +WS  F   IAKC+ K  R  P   +M+  K ++K      K+L + KE +K
Sbjct: 988  KWSLLFHDFIAKCLTKDPRLRPAASEMLKHKFIEKCNPGASKMLAKIKEAKK 1039


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 446 LSNLRSQICASFFFNFSHILSAGIDQLKGFDNSPKMPVADSSRPP 312
           LS L S +  ++F N    L AG+  ++  D S  +  + S +PP
Sbjct: 424 LSGLTS-VTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPP 467


>02_05_1308 +
           35601314-35601390,35602486-35602566,35603513-35604064,
           35604998-35605408,35606830-35607544
          Length = 611

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 516 WDEVCDGCIEKTDFIKRIEELKPKYMGRS 602
           WD VC G  ++TD+ +++EE+  + +GR+
Sbjct: 504 WDAVCSGGEDETDW-RKVEEILRRCIGRN 531


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 370 NLRALTILPKCRWLTLRDLLNSNKIYFLCSLNLYRT 263
           +LR L+    CRWL  + L N  K++ L  LNL +T
Sbjct: 571 HLRVLSF-QGCRWLQSQHLANIGKLFQLRFLNLRKT 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,141
Number of Sequences: 37544
Number of extensions: 314315
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)