Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00009
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    91   2e-19
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    66   3e-12
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    61   1e-10
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   7.8  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   7.8  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +2

Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 391
           + G  AKDLKVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 107 LAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 37/50 (74%), Positives = 43/50 (86%)
 Frame = +3

Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA K
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAK 113


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = +2

Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
           + G  A+D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G 
Sbjct: 67  LAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126

Query: 416 P 418
           P
Sbjct: 127 P 127



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +3

Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA +
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAAR 73


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +3

Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA +
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAAR 73



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +2

Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
           + G  A+D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 67  LAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 257 KDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 358
           K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 70  KELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 367 PTHTQISHWKERRSWCTRLILSTYCLRVFLTPILSRYLHSYYILLW 504
           PT  ++    E+      + +  Y +RVFL  I + ++HS  + L+
Sbjct: 64  PTEKEVPTRNEKPKHANIMRVVVYWIRVFLKRIYTFFVHSARVFLY 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,515
Number of Sequences: 5004
Number of extensions: 54747
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)