Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00009
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0018 + 14164103-14164225,14164596-14164892 97 1e-20
03_01_0433 + 3353255-3353374,3353532-3353828 97 1e-20
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 86 2e-17
12_02_0605 - 20924385-20924606,20924705-20924899 71 9e-13
08_02_0735 + 20564451-20564525,20566346-20566561 67 1e-11
12_02_0151 - 14468480-14468698,14468902-14469090 67 1e-11
07_03_0790 + 21536389-21536577,21536854-21537072 67 1e-11
07_03_0791 + 21539069-21539257,21539493-21539711 66 3e-11
03_05_0949 + 29089293-29089487,29089592-29089810 65 4e-11
05_05_0119 - 22512228-22512500,22512577-22512795 62 3e-10
03_02_0562 - 9469263-9469517,9469619-9469843 61 7e-10
05_01_0107 + 706936-707202,707231-707485 56 3e-08
02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098 31 1.1
12_02_1023 + 25393555-25393901,25396224-25396368 30 2.0
11_01_0426 + 3271324-3271377,3272114-3272227,3272475-3272588,327... 29 4.6
02_04_0054 + 19279579-19280772 28 6.1
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 28 6.1
01_06_1012 - 33806190-33807875,33807963-33808331 28 6.1
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 28 8.0
06_03_0197 + 17794418-17794771,17795040-17795549 28 8.0
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462... 28 8.0
>10_08_0018 + 14164103-14164225,14164596-14164892
Length = 139
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 83 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 135
Score = 86.6 bits (205), Expect = 2e-17
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
+QFPVGRIHR LK R +++GRVGATAAVY+AAILEYLTAEVLELAGNA K
Sbjct: 40 IQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASK 89
>03_01_0433 + 3353255-3353374,3353532-3353828
Length = 138
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 82 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 134
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRIHR LK+R ++HGRVGATAAVYSAAILEYLTAEVLELAGNA K
Sbjct: 39 LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASK 88
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/48 (87%), Positives = 44/48 (91%)
Frame = +3
Query: 117 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
FPVGRIHR LK RT ++GRVGATAAVYSAAILEYLTAEVLELAGNA K
Sbjct: 65 FPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASK 112
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGV 364
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGG V
Sbjct: 106 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGVV 147
>12_02_0605 - 20924385-20924606,20924705-20924899
Length = 138
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/57 (57%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ A TIA GGV+P+IH++L+ KKGG
Sbjct: 69 LAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125
Score = 61.3 bits (142), Expect = 7e-10
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA +
Sbjct: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 75
>08_02_0735 + 20564451-20564525,20566346-20566561
Length = 96
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ A TIA GGV+P+IH L+ KK G A
Sbjct: 29 LAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSA 88
>12_02_0151 - 14468480-14468698,14468902-14469090
Length = 135
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>07_03_0790 + 21536389-21536577,21536854-21537072
Length = 135
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>07_03_0791 + 21539069-21539257,21539493-21539711
Length = 135
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G A
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSA 126
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>03_05_0949 + 29089293-29089487,29089592-29089810
Length = 137
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+ KKGG
Sbjct: 69 LAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGG 125
Score = 61.3 bits (142), Expect = 7e-10
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA +
Sbjct: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 75
>05_05_0119 - 22512228-22512500,22512577-22512795
Length = 163
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK S R+G A VY AA+LEYL AEVLELAGNA +
Sbjct: 35 LQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAAR 83
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK G A
Sbjct: 77 LAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136
>03_02_0562 - 9469263-9469517,9469619-9469843
Length = 159
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK + R+G A VY AA+LEYL AEVLELAGNA +
Sbjct: 37 LQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAAR 85
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 400
+ G A+D K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 79 LAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
>05_01_0107 + 706936-707202,707231-707485
Length = 173
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 400
+ G A+D K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 93 LAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 147
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAE 230
LQFPVGRI R+LK + RVG A VY AA+LEYL AE
Sbjct: 34 LQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAE 72
>02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098
Length = 142
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 290 HLQLAIRGDEELDSLIKATIAGGG 361
HL L + G EELD L++ I GGG
Sbjct: 37 HLSLGVGGAEELDLLLQVGIGGGG 60
>12_02_1023 + 25393555-25393901,25396224-25396368
Length = 163
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 375 MCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSLAHFP 244
MCG T PPA VA + S + S +G+ AHFP
Sbjct: 118 MCGWTAPPATVALPGVETSEAAAFESSTKKGISEEPPLLDAHFP 161
>11_01_0426 +
3271324-3271377,3272114-3272227,3272475-3272588,
3272677-3272834,3273067-3273157,3273668-3273778
Length = 213
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 287 RHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 400
+ + L R DEELD L + GGV IH L+G+K
Sbjct: 141 QQMLLIKRQDEELDELSASVQRIGGVGLTIHDELVGQK 178
>02_04_0054 + 19279579-19280772
Length = 397
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 185 GSSLFCRYFGISYSRGFGVGGKCAKDLKVKRITP 286
G C F +S+++GFG+ KC LK + P
Sbjct: 221 GGDTTCLPFPVSFTKGFGLRSKCINWLKEWQALP 254
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 284 PRHLQLAIRGDEELDSLIKATIAGGGVIP 370
PRH+ + G E D L A+ AGG P
Sbjct: 174 PRHVSRVVIGSEVFDRLASASAAGGWAAP 202
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 345 VAFMRLSNSSSPLIASCKCRGVIRFTFKSLAHFPPTPKP 229
+ M +S + + C CR + FKS+ +F P +P
Sbjct: 349 IGMMLISYWTYAALQGCNCRTLSHLLFKSIKYFRPESRP 387
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 188 SSLFCRYFGISYSRGFGVGGKCAKDLKVK-RITPRHLQL 301
+S FC FG GFG GG C + R+ R + +
Sbjct: 582 TSFFCLGFGTFRGNGFGFGGYCRAGARAAVRVIDREMSI 620
>06_03_0197 + 17794418-17794771,17795040-17795549
Length = 287
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 366 MTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSLAHFPPTPKPL 226
+TPP A +A ++ N PL+ + GV+ F+S+ P L
Sbjct: 143 ITPPSAFMASIKFRNDKCPLMPAKMPIGVLSLLFQSILSAGGNPHEL 189
>03_05_0833 -
28045442-28045881,28045961-28046063,28046172-28046203,
28046299-28046516,28046606-28046721,28047757-28048000,
28048423-28048510,28048596-28048667,28048758-28048869,
28049047-28049115,28049627-28049685,28050067-28050325
Length = 603
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 399 KAVLVHPFNFKYVLLKSVFNSYFEQVPTFILYFTLAGFVKYLNNIMFY*SYHHSVSYLNV 578
K + + FN K SVF Y+ ++ T+I++ V L ++ F +Y S+S+ +
Sbjct: 106 KLISIFVFNLKQAQPYSVFILYWAKIITYIVFLLAQEDVDLLKSLNFD-AYRFSISWSRI 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,425,878
Number of Sequences: 37544
Number of extensions: 358234
Number of successful extensions: 1056
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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