Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00008
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 29 1.1
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 29 1.5
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309... 28 3.5
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305... 28 3.5
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301... 28 3.5
07_01_0231 - 1698244-1700154 28 3.5
04_03_0828 - 20118303-20119086,20119197-20119240 28 3.5
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 3.5
02_05_0195 - 26635237-26635510,26635632-26635729 27 8.1
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 229 NGGETEGWLLNLHSVRKLATLSAY 300
NGG ++GWL LH R+++ + Y
Sbjct: 249 NGGSSDGWLYVLHEEREMSIIQFY 272
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 271 VRKLATLSAYEVFKDILPEYQIRH--QDYSNVKLKKD 375
V KL+ +S VF+DI+P Y+IR + V++ KD
Sbjct: 236 VVKLSLMSLLAVFRDIIPSYRIRQLTEKELTVEVSKD 272
>07_01_0404 +
3093851-3094051,3094622-3094948,3096685-3096798,
3096897-3097109,3097975-3098151,3098270-3100091,
3100107-3100927,3101070-3101390
Length = 1331
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 5 DHDESSSDSGLLGTPEECDTPDREPADDNVISAVD 109
DHD S + PE C +P P + + AVD
Sbjct: 598 DHDSQHSTAHTSTAPESCHSPSFIPEESKSVVAVD 632
>07_01_0400 +
3048607-3048807,3049378-3049704,3051441-3051554,
3051653-3051865,3052731-3052907,3053026-3054847,
3054863-3055683,3055826-3056146
Length = 1331
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 5 DHDESSSDSGLLGTPEECDTPDREPADDNVISAVD 109
DHD S + PE C +P P + + AVD
Sbjct: 598 DHDSQHSTAHTSTAPESCHSPSFIPEESKSVVAVD 632
>07_01_0396 +
3016900-3017175,3017926-3018039,3018138-3018350,
3019216-3019392,3019511-3021332,3021348-3022168,
3022311-3022631
Length = 1247
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 5 DHDESSSDSGLLGTPEECDTPDREPADDNVISAVD 109
DHD S + PE C +P P + + AVD
Sbjct: 514 DHDSQHSTAHTSTAPESCHSPSFIPEESKSVVAVD 548
>07_01_0231 - 1698244-1700154
Length = 636
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +1
Query: 148 IKNRCLVLIFARESREKVKKFLSYPVSNGGETEGWLLNLHSVRKLATLSAYEVFKDILPE 327
+++R +V +F R K + L Y + L N H L +++ KDI
Sbjct: 403 LQHRNIVQLFGY-CRRKNELLLVYDYMENESLDKHLYNFHGQPTLNWSQRFKIIKDIASG 461
Query: 328 YQIRHQDYSNVKLKKDTLA 384
H+++ V + +D A
Sbjct: 462 LLYLHEEWDKVVIHRDVKA 480
>04_03_0828 - 20118303-20119086,20119197-20119240
Length = 275
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 80 ADDNVISAVDLMVARKEKLN---NDKLRIGALCSSLLES 187
++D+V +AVD VAR KL+ N+ GA C S+LES
Sbjct: 76 SEDDVAAAVDHAVARYGKLDVMFNNAGIGGAACHSILES 114
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 3.5
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +2
Query: 2 EDHDESSSDSGLLGTPEECDTPDREPADDNVISAVDLMVARKEKLNNDK----LRIGALC 169
E+ SSSDS + +E D+ D V A+ K+KL D+ + A
Sbjct: 140 ENVGHSSSDSDSSDSDDEGDSSDNNNLKTKVEDALSEENGWKQKLVEDREAKEESLEAEI 199
Query: 170 SSLLESPEKKLKNFFPILYLMEERLKD 250
L ++ E++ K + +L+++ +KD
Sbjct: 200 EKLKQNTEEQAKEISDLKHLLDKAIKD 226
>02_05_0195 - 26635237-26635510,26635632-26635729
Length = 123
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 175 FARESREKVKKFLSYPVSNGGETEGWLLNLHSVRKLATLSAYEVFKDIL 321
F+RE R + K+ S + GGE EG V K + Y++ KD+L
Sbjct: 77 FSREYRGRSKQAAS---TGGGEQEGGGGGGRRVSKAGAVRRYKLLKDVL 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,372,870
Number of Sequences: 37544
Number of extensions: 193980
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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