Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    32   0.14 
AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    28   2.4  
U80439-7|AAB37644.1|  344|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   5.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   5.5  

>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 217 YPVSNGGETEGWLLNLHSVRKLATLSAYEVFKDILPEYQIRHQ--DYSNVKLKKDT 378
           Y + NG +     L   SV+KLA  S  +V  DILP Y IR Q  +    K KK+T
Sbjct: 228 YNLCNGEKIHS--LVRESVQKLAIASTLQVLLDILPGYAIREQTAEEKAQKQKKET 281


>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 17  SSSDSGLLGTPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEK 196
           S+S + +  +PE  + PD    +++  S VD  +      ++D++      S +L+   K
Sbjct: 383 SNSSNEVTESPETIEEPDNVDMEESSESEVDTHIDETRNESDDEITDDVQASDVLQVETK 442

Query: 197 KLKN 208
           K K+
Sbjct: 443 KCKS 446


>U80439-7|AAB37644.1|  344|Caenorhabditis elegans Hypothetical
           protein C01G8.6 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 314 SLNTSYADNVASFRTECRFNNHPSVSPPLDTG*ERNF-LTFSLDSRAKMS 168
           S N SYA  V +  +   ++ +PS  PP     + N  +T + DS  KMS
Sbjct: 265 SSNGSYASTVTASPSVASYSPNPSQPPPPVAVAKLNMKMTITTDSNGKMS 314


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 44    TPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEK 196
             T +E D   +  A + +    +   ARKEK  NDKL++ +  ++   S +K
Sbjct: 13227 TKQEADEKSKLDAQEKIKKVSEDDAARKEKELNDKLKLESEIATKKASADK 13277


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 44    TPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEK 196
             T +E D   +  A + +    +   ARKEK  NDKL++ +  ++   S +K
Sbjct: 13227 TKQEADEKSKLDAQEKIKKVSEDDAARKEKELNDKLKLESEIATKKASADK 13277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,620
Number of Sequences: 27780
Number of extensions: 179155
Number of successful extensions: 422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)