Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   3.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   9.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   EDHDESSSDSGLLGTPEECD-TPDREPADDNVISAVDLMVARKEKLNND 145
           E H ++ SDS ++G+P +    P+ E + ++V +  D    + E+ N++
Sbjct: 276 ELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHKTEEPNDE 324


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 88  VICWFPIRCVTFFRSTQQS*VRARLIMI 5
           +ICW P  CV    S  ++ +  R   +
Sbjct: 282 LICWVPFFCVNIVTSYCKTCISGRAFQV 309


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 190 REKVKKFLSYPVSNGGETEG 249
           REK +    YP SN  +T+G
Sbjct: 317 REKDRGSREYPTSNATDTDG 336


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 165 CAHLCSRVQRKS*KISFLSC 224
           C+HLC    R + K   LSC
Sbjct: 43  CSHLCLPAPRINSKSPLLSC 62


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 165 CAHLCSRVQRKS*KISFLSC 224
           C+HLC    R + K   LSC
Sbjct: 43  CSHLCLPAPRINSKSPLLSC 62


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 200 LKNFFPILYLMEERLKDGY*TC 265
           +KN FP+L+++   L  G   C
Sbjct: 4   MKNIFPVLFVIINVLLHGQVIC 25


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 246 FSLSSIRYRIGKKFFNFFSGLSSKDEHKAPI 154
           F +   +YR+  K FNF   +++    KA I
Sbjct: 486 FLIKIRQYRLNHKPFNFHITINADKPMKAAI 516


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 246 FSLSSIRYRIGKKFFNFFSGLSSKDEHKAPI 154
           F +   +YR+  K FNF   +++    KA I
Sbjct: 486 FLIKIRQYRLNHKPFNFHITINADKPMKAAI 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,670
Number of Sequences: 438
Number of extensions: 2455
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)