Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00007
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531...   113   1e-25
05_01_0129 - 872127-872681,872762-873070,873180-873347                 31   0.66 
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...    30   1.5  
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591...    28   4.6  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    27   8.1  
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955...    27   8.1  

>08_01_0604 -
           5312558-5312622,5312826-5312917,5314128-5314245,
           5314423-5314438
          Length = 96

 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/93 (54%), Positives = 68/93 (73%)
 Frame = +1

Query: 244 KEIGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQV 423
           K++G+VI PD WK GA NT ESGGR + ENK L +KK R+ PY +T  +C IC+ +VHQ 
Sbjct: 8   KKLGKVIVPDKWKEGASNTNESGGRKINENK-LLSKKNRWTPYGNT--KCVICKQQVHQ- 63

Query: 424 GSHYCQACAYKKGICAMCGKKILDTKNYSRAQL 522
            + YC  CAY KG+CAMCGK++LDTK Y ++ +
Sbjct: 64  DAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 96


>05_01_0129 - 872127-872681,872762-873070,873180-873347
          Length = 343

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 332 FSPTTRPPDSTVFLAPAFQGSGVITLPISFRTSH 231
           F+P+  P + TVFL P+F G G I   ++   +H
Sbjct: 299 FTPSYLPMEGTVFLVPSFAGDGGIDAYVALFETH 332


>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 355 GRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMC 477
           G++ P     +  K  +  V Q   + C AC+   GICA C
Sbjct: 57  GKYKPIVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKC 97


>02_05_0094 -
           25758213-25758479,25758886-25758975,25759090-25759118,
           25759208-25759307,25759411-25759545
          Length = 206

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
 Frame = +1

Query: 370 YTSTFQQCKICRTKVHQV------GSHY---CQACAYKKGICAMCGKKILDTKNYSRAQL 522
           +T T  +CK C   VH +      G  Y   C  C++ KG  +MC    +D   Y +   
Sbjct: 3   FTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHF 62

Query: 523 SLL 531
             L
Sbjct: 63  EQL 65


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 365 LNRPFLAVNALFSPTTRPPDSTVFLAPAFQGSGVITLP 252
           LN  F  +N  FS     P  ++F+ P F    +IT+P
Sbjct: 823 LNSLFAQLNPNFSENFILPKCSIFVLPRFTPKDIITMP 860


>04_04_0611 -
           26594737-26594991,26595307-26595396,26595490-26595515,
           26595603-26595702,26595820-26595954
          Length = 201

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
 Frame = +1

Query: 370 YTSTFQQCKICRTKVHQV------GSHY---CQACAYKKGICAMCGKKILDTKNYSRAQL 522
           +T T  +C  C   VH +      G  Y   C  C++ KGI +MC    +D   Y +   
Sbjct: 3   FTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHF 62

Query: 523 SLL 531
             L
Sbjct: 63  EQL 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,693
Number of Sequences: 37544
Number of extensions: 269639
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)