Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00007
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.23 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 388 QCKICRTKVHQVGSHYCQAC 447
           +C I + K H+ GSH C+AC
Sbjct: 264 ECPIGKFK-HEAGSHSCEAC 282


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = +2

Query: 344 PPKKDDLIRTLPHFNSAKSAERKYTRSDHITAKLVHTKRVYVPCVERRF*TLRITAELN 520
           PP++  L+   PH +SA  A++       ++AK  +++   +  +E++   LR+TA ++
Sbjct: 490 PPREAPLVGVQPHQDSATPADQPL----DLSAKPKNSQDNNISLLEQQKIPLRMTAGID 544


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 271 DPWKAGARNTVESGGRVVGENKALTAKKGRFNP 369
           D W+     T+E    V      +T KKG+  P
Sbjct: 76  DRWRDKTFVTIERNNGVPSSLNVVTNKKGKGGP 108


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 409 KVHQVGSHYCQAC 447
           KV  +G  YC AC
Sbjct: 534 KVETIGDAYCVAC 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,161
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)