Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00007
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61780.1 68414.m06967 postsynaptic protein-related similar to...   116   1e-26
At5g48090.1 68418.m05941 expressed protein ; expression supporte...    32   0.24 
At3g02220.1 68416.m00203 expressed protein                             29   1.7  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    29   2.2  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    29   2.2  
At3g55770.1 68416.m06197 LIM domain-containing protein similar t...    29   2.9  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    29   2.9  
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00...    28   3.9  
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT...    27   6.8  
At3g28720.1 68416.m03586 expressed protein                             27   6.8  

>At1g61780.1 68414.m06967 postsynaptic protein-related similar to
           postsynaptic protein CRIPT GI:3098551 from [Rattus
           norvegicus]
          Length = 98

 Score =  116 bits (279), Expect = 1e-26
 Identities = 49/93 (52%), Positives = 67/93 (72%)
 Frame = +1

Query: 244 KEIGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQV 423
           K++ +VI PD WK GARN  E GGR + ENK L+ KK R++PY++   +C IC+ +VHQ 
Sbjct: 8   KKLSKVIVPDKWKDGARNVTEGGGRKINENKLLS-KKNRWSPYSTCTTKCMICKQQVHQD 66

Query: 424 GSHYCQACAYKKGICAMCGKKILDTKNYSRAQL 522
           G  YC  CAY KG+CAMCGK++LDTK Y ++ +
Sbjct: 67  GK-YCHTCAYSKGVCAMCGKQVLDTKMYKQSNV 98


>At5g48090.1 68418.m05941 expressed protein ; expression supported
           by MPSS
          Length = 636

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 403 RTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYSR 513
           +T++  +G++ C  C YK+  C  CG+     +N+S+
Sbjct: 73  KTQIQALGTYLCNNCLYKQHQCYACGELGSSDENFSQ 109


>At3g02220.1 68416.m00203 expressed protein 
          Length = 227

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 328 ENKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 489
           E  A   K G++   T   +  K  +  V Q     C  CA ++ +CA C + +
Sbjct: 48  EQIAWKRKYGKYKTLTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSV 101


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 334 KALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAM 474
           K LTA   RF  Y+    +C++C +K+     ++C +C +  G+C +
Sbjct: 119 KLLTA---RFPDYSDG--KCRLCGSKIDDRLFYHCSSCNFTLGLCCV 160


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 373 TSTFQQCKICRTKVHQVGSHYCQAC-AYKKGICA 471
           T  F+ C +C  K H +  +YC  C  Y   +CA
Sbjct: 52  TKPFEHCILCSRKAHNI-IYYCDVCDIYMHVLCA 84


>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 199

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +1

Query: 370 YTSTFQQCKICRTKVHQVGSHYCQACAYKKGI--CAMCGKKILDTKNYSRAQLSLLLCYP 543
           +T T Q+CK C   V+ V         Y K    C  C K  L   +YS  +  +L C P
Sbjct: 3   FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHC-KSRLQLSSYSSME-GVLYCKP 60


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 448 AYKKGICAMCGKKILDTKNY 507
           AY  G C++CGKKI D   Y
Sbjct: 190 AYTDGNCSLCGKKIFDEMFY 209


>At3g26000.1 68416.m03239 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 453

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 424 GSHYCQACAYKKGICAMCGKKILDTKNYSRAQLSLLLC 537
           GS  C+AC+     C  CG+ I+DT+ Y       LLC
Sbjct: 405 GSEECRACSLCIQRCYHCGRCIIDTE-YEEMFCLELLC 441


>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
           / homeodomain containing protein 1 (H1) identical to
           homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
           [Arabidopsis thaliana]
          Length = 383

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 225 WFVRSAKRNWQSNNT 269
           WF+   KRNW SN++
Sbjct: 353 WFINQRKRNWNSNSS 367


>At3g28720.1 68416.m03586 expressed protein 
          Length = 687

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 304 ESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGK 483
           ESGG ++GE K        F  Y+  +++C IC   V +  + Y     +      +   
Sbjct: 347 ESGGLLLGEQKL------SFKSYSVNYRECSICSFAVSRGMNSYTSRFLFDN--YTLIVS 398

Query: 484 KILDTKNYSRA 516
           + LD+K+  RA
Sbjct: 399 EYLDSKHMHRA 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,229
Number of Sequences: 28952
Number of extensions: 228502
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)