Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00006
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 85 8e-18
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 75 7e-15
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 35 0.009
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.016
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.19
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.44
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.59
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.59
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.4
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.8
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 2.4
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 2.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 3.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.1
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.5
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 5.5
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 9.5
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 85.0 bits (201), Expect = 8e-18
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +1
Query: 7 LKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
LK+ L +F +G+++D+ A KTL+MRGQAFV+F + +A+ AL+ +QG+P Y KPM IQ
Sbjct: 42 LKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101
Query: 187 YSKIDSDIIAK 219
YSK SDII +
Sbjct: 102 YSKSKSDIIVQ 112
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 333 GAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEL 509
GA + +N + PPN++L L N+P E + +L+ +F F GF+EVR+VP R IAFVE
Sbjct: 158 GAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEY 217
Query: 510 E 512
+
Sbjct: 218 D 218
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 75.4 bits (177), Expect = 7e-15
Identities = 33/72 (45%), Positives = 54/72 (75%)
Frame = +1
Query: 4 ELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
+L+ +LY +FS +G ++DIVA+KT KMRGQA V+F + S+A +A+++++ F F+ K M+I
Sbjct: 19 DLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKI 78
Query: 184 QYSKIDSDIIAK 219
QY+ S II +
Sbjct: 79 QYAHSKSKIIER 90
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EEL ++ F Q+G +L + +K R +FV F+ A+ AL Q + +R
Sbjct: 93 EELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIR 152
Query: 181 IQYSKIDSDI 210
I+ +K++ I
Sbjct: 153 IERAKVNRTI 162
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 34.3 bits (75), Expect = 0.016
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 327 IPGAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAF 500
IP + N A+Q PP +++ NLP TSE L +LF+ G+K + + F
Sbjct: 408 IPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCF 467
Query: 501 VELE 512
VE E
Sbjct: 468 VEFE 471
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
++ LY+IF +G++ + T+ A + F + SAT AL M GF + ++Y
Sbjct: 176 QERLYSIFRTYGKLRSV----TINSPTSATLSFSSLRSATSALNCMHGFVYGKTEFHMRY 231
Query: 190 SKIDSDIIAK 219
++ + K
Sbjct: 232 RHMNRFVAFK 241
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 70 KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPK 249
K L M G FV F++ +SA A+ +M GF + I+ S D A+ + +PK
Sbjct: 661 KYLSM-GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 31 FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
F+QFG++LD M T + RG FV + E SA A S + KP+ ++
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVK 320
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFR 111
E SL F QFG++LD M+ T + RG F+ F+
Sbjct: 173 ETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
E+ + L +TNL D+T E L LF +F G + V L ++
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK 237
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++ L +F +FG I + K T + +G AFV + + A A + G+ + + +R
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILR 274
Query: 181 IQYSK 195
++SK
Sbjct: 275 CEFSK 279
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 357 NAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 476
++++ P+ ILF+ NL ET++ L F Q + VRL+
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 94 AFVIFREISSATVALRSMQGFPFYDKPMRI 183
A+++FR+ SSA AL S+ G F D+ +R+
Sbjct: 229 AYIVFRDSSSARSAL-SLNGTMFMDRHLRV 257
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 381 ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 476
++F+ N+P + SE ++ +FNQ K +LV
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 25 AIFSQFGQILDIVAMKTLKMRGQAF--VIFREISSATVALRSMQGFPFYDKPMRI 183
AIF FG I + + + R + F + +R SA AL M GF + MR+
Sbjct: 358 AIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 625 NYMFYITLFLSKSNLHCMCWCYFES 551
N+ F++ ++L + LHC C Y ES
Sbjct: 161 NHPFHVPVYLFEKRLHCSCSEYEES 185
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQ---AFVIFREISSATVALRSMQGFPFYD 168
L +I+S FG + ++V K + + + ++F +SSA A+ + + YD
Sbjct: 184 LRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSKIYD 236
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 113 KFQVPLLLCGACKD 154
KF +P ++CGACK+
Sbjct: 65 KFHIPCVICGACKN 78
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+K + F +FG+I I K L + AFV F I A +R++ P Y RI +
Sbjct: 312 EKEIEEAFGKFGKIEHI---KILSKKNIAFVHFLNIRDAIKVVRTLSCDPDYHS-WRIFF 367
Query: 190 SKIDSDIIAKSKGTFQER 243
SD A +F ER
Sbjct: 368 G---SDRCANHPPSFDER 382
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 94 AFVIFREISSATVALRSMQGFPFYDKPMRIQYSKI 198
AF+ F SA A+ S+ G F ++++Y+ I
Sbjct: 69 AFITFENKCSADNAIASLNGSSFQGNTLKVEYTHI 103
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 468 RLVPNRHDIAFVELEMKCNLQQLKKHYKDSK 560
RL R + FV+LE+K ++ LKK +++K
Sbjct: 275 RLEKIRELLTFVQLELKYYVEPLKKELQETK 305
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 85 RGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
RG FV F + + AL MQG D+P+R+
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVELEMKCNLQQ 533
PP +LF+ L T + L ++F++F +++ ++ AF+E + K ++++
Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 294 FSFSSHHQYL*VAWTFRSFLKCSFTFCYYITINF 193
F+ +S H YL W + L ++TF + + I++
Sbjct: 278 FTLTSGHGYLFWLWILSALLSSAYTFLWDVFIDW 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,956
Number of Sequences: 5004
Number of extensions: 53889
Number of successful extensions: 167
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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