Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00006
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 5e-34
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.022
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 32 0.47
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.47
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 141 bits (341), Expect = 5e-34
Identities = 67/85 (78%), Positives = 76/85 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELKKSLYAIFSQFG ILDIVA+KTLKMRGQAFV+F++I SAT ALRSMQGFPFYDKPMR
Sbjct: 21 EELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKRP 255
IQY+K SD +AK++GTF R K+P
Sbjct: 81 IQYAKGKSDAVAKAEGTFVPREKKP 105
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/55 (74%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
Frame = +3
Query: 354 VNAEQP--PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+ +QP PN ILFLTNLP ET+E+MLSMLFNQFPGFKEVRLVP R DI+FVE E
Sbjct: 157 IPTQQPDLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFE 211
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
NE+Q+ AK+ALQGF+ITPT+AM I++AKK
Sbjct: 212 NEVQAGTAKDALQGFRITPTNAMSISYAKK 241
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
E + K+++ F + I +T + +G FV FRE +A A+ M GF +P++
Sbjct: 255 EAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLK 314
Query: 181 I 183
I
Sbjct: 315 I 315
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 55 DIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
DI MK +M+GQAFV A ALR + G+ + KP+
Sbjct: 282 DIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
E+LK + +FS+FGQI+ + M+ RG F+ F S A A+++ G+ DK
Sbjct: 88 EKLKNVIRKVFSKFGQIVTEHYPMEKDLTRGYIFLEFSNASDAVRAVKTANGYKL-DKHH 146
Query: 178 RIQYSKI-DSDIIAKSKGTFQERPKRP 255
+ D + + K +QE K+P
Sbjct: 147 IFAVNHFEDFNKLLSLKEEWQEPTKQP 173
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 31 FSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDS 204
F ++G++ +V + + QA V F + SAT+A M+G + + +R+++ +S
Sbjct: 348 FGRYGRVTKVVINR---VTNQALVSFDSVDSATIAHAQMKGRTMFSRRVRVEFVSRES 402
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 31 FSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSM 147
F ++G+++D+ K AFV F E+SSA A R M
Sbjct: 269 FERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKM 307
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
+ + + F Q+G I D+ +K T + RG +V F + SSA +A M G D P I
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNIGDDPKPI 96
Query: 184 Q 186
+
Sbjct: 97 K 97
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 384 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
LF++NLP + E + LF++ K+VRLV NR
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNR 206
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKI 198
L+ F Q G + + +M+GQAFV F + A A + G+ +P+ I++ +
Sbjct: 133 LFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLVNGYRLKGRPVIIEFGRK 192
Query: 199 DSDIIAKSKGTFQERPKRPSYLKV 270
A+ + + P PS LKV
Sbjct: 193 REK--AQQRDSEAGAPLDPSLLKV 214
>SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 348 NNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELEMKCNL 527
NN+ PP F N TS LS++ N FP ++R + NR+ I M
Sbjct: 122 NNIIWYNPP----FSKNTSTNTSHRFLSLIDNNFPKDHKLRKIFNRNTIKISYSCMSNTK 177
Query: 528 QQLKKHYK 551
Q + H K
Sbjct: 178 QIIDSHNK 185
>SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 645 LNLFILKITCFTLHYFLAKVIFIACVGVILNPCNASLAAADCISFP 508
L L LK T F++ + IA V V LN C+ SL I FP
Sbjct: 89 LMLDTLKYDSVTACEFVSSINLIAIVAVSLNLCSVSLERFLVIQFP 134
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFP---FYDK 171
+ +K+S++ F +FG I V + A + FR + A R+++ +D+
Sbjct: 102 QPMKESIFHEFKKFGDIS--VHLFGRGNDRYAVLYFRSLDDAKETKRALERRSRTILFDR 159
Query: 172 PMRIQYSKIDSDIIAKSKGTFQERPKRP 255
P+RI+Y+ S G + R P
Sbjct: 160 PLRIEYNLYPERTSNHSPGDYYHRSASP 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,783
Number of Sequences: 59808
Number of extensions: 381341
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -