Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00006
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for ... 144 3e-34
M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein... 144 3e-34
BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear ribonucle... 144 3e-34
BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear ribonucle... 144 3e-34
M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small ... 133 5e-31
BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear ribonucle... 133 5e-31
BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear ribonucle... 133 5e-31
BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclea... 133 5e-31
AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear ribonucle... 133 5e-31
D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein. 41 0.004
BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA bind... 41 0.004
BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA bind... 41 0.004
BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA bind... 41 0.004
AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RN... 41 0.004
AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein. 41 0.004
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 40 0.010
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 40 0.010
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 40 0.010
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 40 0.010
BX322653-1|CAH72167.1| 517|Homo sapiens novel protein protein. 39 0.018
BC010697-1|AAH10697.2| 517|Homo sapiens RNA-binding region (RNP... 39 0.018
AY099329-1|AAM45139.1| 517|Homo sapiens RNA recognition protein... 39 0.018
AK057799-1|BAB71580.1| 517|Homo sapiens protein ( Homo sapiens ... 39 0.018
AB058742-1|BAB47468.1| 541|Homo sapiens KIAA1839 protein protein. 39 0.018
AK128423-1|BAC87434.1| 135|Homo sapiens protein ( Homo sapiens ... 38 0.024
CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein. 37 0.055
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 35 0.29
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 35 0.29
BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein pr... 35 0.29
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 35 0.29
BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein. 35 0.29
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 35 0.29
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 35 0.29
BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif prote... 34 0.39
AL109839-2|CAI95632.1| 330|Homo sapiens chromosome 20 open read... 33 0.67
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 33 0.67
AL008725-5|CAI95663.1| 330|Homo sapiens chromosome 20 open read... 33 0.67
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 33 0.67
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 33 1.2
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 33 1.2
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 33 1.2
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 33 1.2
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 33 1.2
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 33 1.2
BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein. 33 1.2
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 33 1.2
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 33 1.2
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 33 1.2
AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar t... 33 1.2
AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar t... 33 1.2
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 33 1.2
AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine tract-bi... 33 1.2
AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein. 32 1.6
AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein. 32 1.6
AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens ... 32 1.6
BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif prote... 32 2.1
AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens ... 32 2.1
AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif prote... 32 2.1
AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein FL... 32 2.1
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 31 2.7
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 31 2.7
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 31 2.7
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 31 2.7
BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif prote... 31 2.7
BC033674-1|AAH33674.1| 283|Homo sapiens bol, boule-like (Drosop... 31 2.7
AM295005-1|CAL25726.1| 289|Homo sapiens boll protein protein. 31 2.7
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 31 2.7
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 31 2.7
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 31 2.7
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 31 2.7
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 31 2.7
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 31 2.7
AK093453-1|BAC04171.1| 339|Homo sapiens protein ( Homo sapiens ... 31 2.7
AK058099-1|BAB71664.1| 283|Homo sapiens protein ( Homo sapiens ... 31 2.7
AF272858-1|AAK58689.1| 283|Homo sapiens BOULE protein. 31 2.7
AC011997-1|AAX93045.1| 283|Homo sapiens unknown protein. 31 2.7
D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding pro... 31 4.7
BC139836-1|AAI39837.1| 563|Homo sapiens RBM15B protein protein. 31 4.7
BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein. 31 4.7
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 31 4.7
BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein. 31 4.7
BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulat... 31 4.7
BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif prote... 31 4.7
BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for IM... 31 4.7
AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of diffe... 31 4.7
AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of diffe... 31 4.7
AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of diffe... 31 4.7
AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of diffe... 31 4.7
AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein pr... 31 4.7
AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif prote... 31 4.7
AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein. 31 4.7
AB208812-1|BAD92049.1| 338|Homo sapiens H2.0-like homeo box 1 v... 31 4.7
AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein. 31 4.7
X75755-1|CAA53383.1| 221|Homo sapiens PR264/SC35 protein. 30 6.3
X62447-1|CAA44307.1| 221|Homo sapiens PR 264 protein. 30 6.3
BT007250-1|AAP35914.1| 221|Homo sapiens splicing factor, argini... 30 6.3
BC070086-1|AAH70086.1| 221|Homo sapiens splicing factor, argini... 30 6.3
BC001303-1|AAH01303.1| 221|Homo sapiens SFRS2 protein protein. 30 6.3
BC000339-1|AAH00339.1| 221|Homo sapiens SFRS2 protein protein. 30 6.3
AK223252-1|BAD96972.1| 221|Homo sapiens splicing factor, argini... 30 6.3
AK092489-1|BAC03903.1| 201|Homo sapiens protein ( Homo sapiens ... 30 6.3
U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation in... 30 8.3
U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein. 30 8.3
BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation ... 30 8.3
BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for IM... 30 8.3
BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein. 30 8.3
AL365412-1|CAB96956.1| 144|Homo sapiens hypothetical protein, s... 30 8.3
AC004971-1|AAP21880.1| 385|Homo sapiens unknown protein. 30 8.3
>X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific A protein. ).
Length = 282
Score = 144 bits (348), Expect = 3e-34
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELKKSLYAIFSQFGQILDI+ ++LKMRGQAFVIF+E+SSAT ALRSMQGFPFYDKPMR
Sbjct: 24 DELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDIIAK KGTF ER ++
Sbjct: 84 IQYAKTDSDIIAKMKGTFVERDRK 107
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/51 (82%), Positives = 47/51 (92%)
Frame = +3
Query: 360 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE +
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252
Score = 47.6 bits (108), Expect = 4e-05
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
NE+Q+ AA++ALQGFKIT +AMKI+FAKK
Sbjct: 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282
>M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein A
protein.
Length = 282
Score = 144 bits (348), Expect = 3e-34
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELKKSLYAIFSQFGQILDI+ ++LKMRGQAFVIF+E+SSAT ALRSMQGFPFYDKPMR
Sbjct: 24 DELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDIIAK KGTF ER ++
Sbjct: 84 IQYAKTDSDIIAKMKGTFVERDRK 107
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/51 (82%), Positives = 47/51 (92%)
Frame = +3
Query: 360 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE +
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252
Score = 47.6 bits (108), Expect = 4e-05
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
NE+Q+ AA++ALQGFKIT +AMKI+FAKK
Sbjct: 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282
>BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 144 bits (348), Expect = 3e-34
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELKKSLYAIFSQFGQILDI+ ++LKMRGQAFVIF+E+SSAT ALRSMQGFPFYDKPMR
Sbjct: 24 DELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDIIAK KGTF ER ++
Sbjct: 84 IQYAKTDSDIIAKMKGTFVERDRK 107
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/51 (82%), Positives = 47/51 (92%)
Frame = +3
Query: 360 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE +
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252
Score = 47.6 bits (108), Expect = 4e-05
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
NE+Q+ AA++ALQGFKIT +AMKI+FAKK
Sbjct: 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282
>BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 144 bits (348), Expect = 3e-34
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELKKSLYAIFSQFGQILDI+ ++LKMRGQAFVIF+E+SSAT ALRSMQGFPFYDKPMR
Sbjct: 24 DELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDIIAK KGTF ER ++
Sbjct: 84 IQYAKTDSDIIAKMKGTFVERDRK 107
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/51 (82%), Positives = 47/51 (92%)
Frame = +3
Query: 360 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE +
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252
Score = 47.6 bits (108), Expect = 4e-05
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
NE+Q+ AA++ALQGFKIT +AMKI+FAKK
Sbjct: 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282
>M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small
nuclear RNA-associated B'' antigen mRNA, complete cds.
).
Length = 225
Score = 133 bits (322), Expect = 5e-31
Identities = 59/84 (70%), Positives = 75/84 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLYA+FSQFG ++DIVA+KT+KMRGQAFVIF+E+ S+T ALR +QGFPFY KPMR
Sbjct: 21 EELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDII+K +GTF ++ K+
Sbjct: 81 IQYAKTDSDIISKMRGTFADKEKK 104
Score = 93.9 bits (223), Expect = 4e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+ PPN ILFL NLP+ET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVE E
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Score = 51.6 bits (118), Expect = 2e-06
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
N+ Q+ AA++ALQGFKITP+HAMKIT+AKK
Sbjct: 196 NDGQAGAARDALQGFKITPSHAMKITYAKK 225
>BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 133 bits (322), Expect = 5e-31
Identities = 59/84 (70%), Positives = 75/84 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLYA+FSQFG ++DIVA+KT+KMRGQAFVIF+E+ S+T ALR +QGFPFY KPMR
Sbjct: 21 EELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDII+K +GTF ++ K+
Sbjct: 81 IQYAKTDSDIISKMRGTFADKEKK 104
Score = 93.9 bits (223), Expect = 4e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+ PPN ILFL NLP+ET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVE E
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Score = 51.6 bits (118), Expect = 2e-06
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
N+ Q+ AA++ALQGFKITP+HAMKIT+AKK
Sbjct: 196 NDGQAGAARDALQGFKITPSHAMKITYAKK 225
>BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 133 bits (322), Expect = 5e-31
Identities = 59/84 (70%), Positives = 75/84 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLYA+FSQFG ++DIVA+KT+KMRGQAFVIF+E+ S+T ALR +QGFPFY KPMR
Sbjct: 21 EELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDII+K +GTF ++ K+
Sbjct: 81 IQYAKTDSDIISKMRGTFADKEKK 104
Score = 93.9 bits (223), Expect = 4e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+ PPN ILFL NLP+ET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVE E
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Score = 51.6 bits (118), Expect = 2e-06
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
N+ Q+ AA++ALQGFKITP+HAMKIT+AKK
Sbjct: 196 NDGQAGAARDALQGFKITPSHAMKITYAKK 225
>BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 109
Score = 133 bits (322), Expect = 5e-31
Identities = 59/84 (70%), Positives = 75/84 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLYA+FSQFG ++DIVA+KT+KMRGQAFVIF+E+ S+T ALR +QGFPFY KPMR
Sbjct: 21 EELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDII+K +GTF ++ K+
Sbjct: 81 IQYAKTDSDIISKMRGTFADKEKK 104
>AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 133 bits (322), Expect = 5e-31
Identities = 59/84 (70%), Positives = 75/84 (89%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLYA+FSQFG ++DIVA+KT+KMRGQAFVIF+E+ S+T ALR +QGFPFY KPMR
Sbjct: 21 EELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 80
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K DSDII+K +GTF ++ K+
Sbjct: 81 IQYAKTDSDIISKMRGTFADKEKK 104
Score = 93.9 bits (223), Expect = 4e-19
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
+ PPN ILFL NLP+ET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVE E
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Score = 51.6 bits (118), Expect = 2e-06
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
N+ Q+ AA++ALQGFKITP+HAMKIT+AKK
Sbjct: 196 NDGQAGAARDALQGFKITPSHAMKITYAKK 225
>D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RNA
binding protein protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 40.7 bits (91), Expect = 0.004
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G + +R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 181 IQYSKIDSD 207
+ + SD
Sbjct: 79 VDQAGKSSD 87
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 39.5 bits (88), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 39.5 bits (88), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 39.5 bits (88), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 245 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 39.5 bits (88), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 257 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 314
>BX322653-1|CAH72167.1| 517|Homo sapiens novel protein protein.
Length = 517
Score = 38.7 bits (86), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>BC010697-1|AAH10697.2| 517|Homo sapiens RNA-binding region (RNP1,
RRM) containing 3 protein.
Length = 517
Score = 38.7 bits (86), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AY099329-1|AAM45139.1| 517|Homo sapiens RNA recognition protein
protein.
Length = 517
Score = 38.7 bits (86), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AK057799-1|BAB71580.1| 517|Homo sapiens protein ( Homo sapiens
cDNA FLJ25070 fis, clone CBL05164. ).
Length = 517
Score = 38.7 bits (86), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AB058742-1|BAB47468.1| 541|Homo sapiens KIAA1839 protein protein.
Length = 541
Score = 38.7 bits (86), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 467 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 526
>AK128423-1|BAC87434.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46566 fis, clone THYMU3040829, moderately
similar to Cold-inducible RNA-binding protein. ).
Length = 135
Score = 38.3 bits (85), Expect = 0.024
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQG 153
++SL +FS++GQI ++V +K T + RG FV F I A A+ +M G
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
>CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein.
Length = 423
Score = 37.1 bits (82), Expect = 0.055
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I +IV MK T + +G + F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGLITFSDSECARRALEQLNGFELAGRPMRV 320
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein
protein.
Length = 373
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 109 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein.
Length = 508
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 244 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 301
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 34.7 bits (76), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif protein
41 protein.
Length = 413
Score = 34.3 bits (75), Expect = 0.39
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
M T +MRGQAF+ F A AL + G+ Y K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
>AL109839-2|CAI95632.1| 330|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.67
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
K+LY FS FG IL VA RG FV F +A A+ +M G D+ + + +
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 190 SK 195
K
Sbjct: 173 FK 174
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 33.5 bits (73), Expect = 0.67
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
K+LY FS FG IL VA RG FV F +A A+ +M G D+ + + +
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 190 SK 195
K
Sbjct: 173 FK 174
>AL008725-5|CAI95663.1| 330|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.67
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
K+LY FS FG IL VA RG FV F +A A+ +M G D+ + + +
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 190 SK 195
K
Sbjct: 173 FK 174
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 33.5 bits (73), Expect = 0.67
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
K+LY FS FG IL VA RG FV F +A A+ +M G D+ + + +
Sbjct: 113 KALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 190 SK 195
K
Sbjct: 173 FK 174
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein.
Length = 243
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQG 153
K+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 147 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 194
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340530)
protein.
Length = 200
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQG 153
K+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340529)
protein.
Length = 200
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQG 153
K+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPS 282
>AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine
tract-binding protein 1 isoform c variant protein.
Length = 329
Score = 32.7 bits (71), Expect = 1.2
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 217 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 275
Query: 193 KIDSDIIA--KSKGTFQERPKRPS 258
K+ S + K RP PS
Sbjct: 276 KLTSLNVKYNNDKSRDYTRPDLPS 299
>AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein.
Length = 413
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein.
Length = 405
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens
cDNA FLJ11016 fis, clone PLACE1003334. ).
Length = 405
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +F Q G ++ + K K + AFV F+ S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens
cDNA FLJ11153 fis, clone PLACE1006917, weakly similar to
HSH49 PROTEIN. ).
Length = 267
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +F Q G ++ + K K + AFV F+ S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +F Q G ++ + K K + AFV F+ S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein
FLJ11153 variant protein.
Length = 155
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +F Q G ++ + K K + AFV F+ S A+ + G Y +P++IQ+
Sbjct: 32 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 90
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +F Q G ++ + K K + AFV F+ S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIRLYGRPIKIQF 84
>BC033674-1|AAH33674.1| 283|Homo sapiens bol, boule-like
(Drosophila) protein.
Length = 283
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 32 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 91 QEAEKLNYKDKK 102
>AM295005-1|CAL25726.1| 289|Homo sapiens boll protein protein.
Length = 289
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 38 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 96
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 97 QEAEKLNYKDKK 108
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL V +G AFV F +A A+ M G D+
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AK093453-1|BAC04171.1| 339|Homo sapiens protein ( Homo sapiens
cDNA FLJ36134 fis, clone TESTI2024648, weakly similar to
Homo sapiens germline specific RNA binding protein
(DAZL1) mRNA. ).
Length = 339
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 38 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 96
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 97 QEAEKLNYKDKK 108
>AK058099-1|BAB71664.1| 283|Homo sapiens protein ( Homo sapiens
cDNA FLJ25370 fis, clone TST01870. ).
Length = 283
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 32 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 91 QEAEKLNYKDKK 102
>AF272858-1|AAK58689.1| 283|Homo sapiens BOULE protein.
Length = 283
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 32 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 91 QEAEKLNYKDKK 102
>AC011997-1|AAX93045.1| 283|Homo sapiens unknown protein.
Length = 283
Score = 31.5 bits (68), Expect = 2.7
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVELEMKCNLQQL- 536
PN+I F+ + +T+E L F+Q+ KEV++V +R ++ FV E + + Q++
Sbjct: 32 PNRI-FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
Query: 537 ----KKHYKDSK 560
K +YKD K
Sbjct: 91 QEAEKLNYKDKK 102
>D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding
protein II protein.
Length = 193
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 16 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 64
>BC139836-1|AAI39837.1| 563|Homo sapiens RBM15B protein protein.
Length = 563
Score = 30.7 bits (66), Expect = 4.7
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPF--YDKPMRIQY 189
SL A+ +F + I + +K A++ + + +A A M+GFP D+ +R+ +
Sbjct: 103 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 162
Query: 190 SKIDSDIIAKSKGTFQERPKRPSYLKVLMMGRKRKTKILAD 312
+K + + +Q P P + ++L G R + AD
Sbjct: 163 AKAEE---TRYPQQYQPSP-LPVHYELLTDGYTRHRNLDAD 199
>BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein.
Length = 173
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQG 153
+SL +FSQFG+ L + M+ K +G FV + + A A+ M G
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein.
Length = 558
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 204 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 262
Query: 193 KIDS 204
K+ S
Sbjct: 263 KLTS 266
>BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulator
of differentiation 1 (S. pombe) protein.
Length = 618
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 241 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 299
Query: 193 KIDS 204
K+ S
Sbjct: 300 KLTS 303
>BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for
IMAGE:3686686) protein.
Length = 163
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 198 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 256
Query: 193 KIDS 204
K+ S
Sbjct: 257 KLTS 260
>AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 457
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 103 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 161
Query: 193 KIDS 204
K+ S
Sbjct: 162 KLTS 165
>AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 524
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 170 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 228
Query: 193 KIDS 204
K+ S
Sbjct: 229 KLTS 232
>AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 198 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 256
Query: 193 KIDS 204
K+ S
Sbjct: 257 KLTS 260
>AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein
protein.
Length = 322
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein.
Length = 351
Score = 30.7 bits (66), Expect = 4.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +FSQ+G+I++I + KT K +G F+ + + S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AB208812-1|BAD92049.1| 338|Homo sapiens H2.0-like homeo box 1
variant protein.
Length = 338
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Frame = -3
Query: 433 IDNIIS-----EVSSGRFVKNRIWLGGCSALTLFRIPAP--GIPC 320
ID I+S +V G ++ R W GGC LT +P P G+ C
Sbjct: 293 IDRILSAEFDPKVKEGNTLRGRSWAGGCRPLTTDPLPGPRAGLGC 337
>AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein.
Length = 521
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDK--PMRIQYS 192
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 167 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 225
Query: 193 KIDS 204
K+ S
Sbjct: 226 KLTS 229
>X75755-1|CAA53383.1| 221|Homo sapiens PR264/SC35 protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>X62447-1|CAA44307.1| 221|Homo sapiens PR 264 protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>BT007250-1|AAP35914.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>BC070086-1|AAH70086.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>BC001303-1|AAH01303.1| 221|Homo sapiens SFRS2 protein protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>BC000339-1|AAH00339.1| 221|Homo sapiens SFRS2 protein protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>AK223252-1|BAD96972.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 variant protein.
Length = 221
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>AK092489-1|BAC03903.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ35170 fis, clone PLACE6012942, highly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 2. ).
Length = 201
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+L +F ++G++ D+ + T + RG AFV F + A A+ +M G + +R+Q
Sbjct: 29 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 88
Query: 187 YSK 195
++
Sbjct: 89 MAR 91
>U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation
initiation factor protein.
Length = 814
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 201 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 253
>U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein.
Length = 873
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 201 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 253
>BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation
initiation factor 3, subunit B protein.
Length = 814
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 201 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 253
>BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for
IMAGE:4124553) protein.
Length = 622
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 10 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 62
>BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein.
Length = 814
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 201 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 253
>AL365412-1|CAB96956.1| 144|Homo sapiens hypothetical protein,
similar to (NP_006139.1) LASP-1, LIM and SH3 domain
prote protein.
Length = 144
Score = 29.9 bits (64), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 379 WLGGCSALTLFRIPAPGIPCP 317
W+G C+A + R+P P +P P
Sbjct: 43 WVGRCTAFSFLRLPFPSLPFP 63
>AC004971-1|AAP21880.1| 385|Homo sapiens unknown protein.
Length = 385
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGF 156
E+LK ++ IFS+FG+I D + K +G F+ + + A A+++ G+
Sbjct: 201 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 253
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,671,493
Number of Sequences: 237096
Number of extensions: 1843753
Number of successful extensions: 3196
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3196
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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