Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00005
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 29 2.2
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 28 2.9
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 24 3.6
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 27 6.8
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 6.8
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 6.8
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 37 TLATTTIQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALN 186
T++ ++ +VI+QHHH N HH + + +H HH + N
Sbjct: 553 TISIINSMIIINIVINQHHH-QKQQNQHHRHHQKQQNQH--HRHHQKKQN 599
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 55 IQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
I ++ + H HHH ++HH QQ H HHH
Sbjct: 1022 ITIIITIFNHYHHHRRRHHHYHHQQQ------HQFHHHH 1054
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = +1
Query: 19 VICHGSTLATTTIQFLVKVVIHQHHH 96
+I H +++ ++ ++IH HHH
Sbjct: 292 IIIHHHHHPSSSSSIIIIIIIHHHHH 317
Score = 22.2 bits (45), Expect(2) = 3.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 73 VVIHQHHHFWT*AN-FHH*QQEARVTKHP 156
++IH HHH + ++ HH + HP
Sbjct: 326 IIIHHHHHPSSSSSIIHHHPSSIIIHHHP 354
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 437 VCLLLCLQEKSVSLCASCLVLVQC 366
VC++LC + LC SC+ +V C
Sbjct: 125 VCIVLCPSCVCIVLCPSCVCIVLC 148
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +1
Query: 64 LVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
++ + H HHH HH +P HHH
Sbjct: 561 IIAISTHPHHHHLHHHRHHHRHHHYHHHHYPHHHHH 596
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 37 TLATTTIQFLVK--VVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
T+ +TTI + +VI++ HH + HH Q H HHH
Sbjct: 190 TITSTTIITMPSPSIVIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHH 236
>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.1 bits (57), Expect = 6.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 28 HGSTLATTTIQFLVKVVIHQHHHF 99
+ S+L + I ++ V++H HHH+
Sbjct: 306 YASSLPSLCIIIIITVIMHHHHHY 329
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
H+HHH + HH Q+ +H +HHH
Sbjct: 315 HRHHHHH---HHHHHQRHRHRHRHRHRHHH 341
>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALN 186
H HHH + ++H + + +H +HHH L+
Sbjct: 8 HSHHHHYPHYQYNH-HHDQQSHQHHDRHHHREVLD 41
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHHHL 174
H HHH N HH Q+ H HHH+
Sbjct: 272 HHHHHHHHHHNHHHHHQQ----HHHHHHHHI 298
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 439 RYVCYCAFRRSLYPFARLVWCLCNVC 362
RY+C CAF + CLC +C
Sbjct: 1914 RYICLCAFCIFALSVSLRYLCLCAIC 1939
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,620
Number of Sequences: 59808
Number of extensions: 181051
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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