Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00005
(439 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription ... 39 0.009
BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription ... 39 0.009
AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein. 39 0.009
AF044215-1|AAQ13426.1| 378|Homo sapiens unknown protein. 39 0.009
AY739714-1|AAW65983.1| 1224|Homo sapiens HECTD1 protein. 31 1.3
AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin r... 31 1.3
AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein. 31 1.3
AL358780-2|CAI13978.2| 818|Homo sapiens novel protein (FLJ16611... 29 7.0
AK131456-1|BAD18601.1| 762|Homo sapiens protein ( Homo sapiens ... 29 7.0
AB234866-1|BAE93016.1| 827|Homo sapiens DLN-1 protein. 29 7.0
>BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 38.7 bits (86), Expect = 0.009
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 15 MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
M+ F N+ S G D S LDLS+FP+L R G+G+ G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254
Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278
>BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 38.7 bits (86), Expect = 0.009
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 15 MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
M+ F N+ S G D S LDLS+FP+L R G+G+ G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254
Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278
>AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein.
Length = 540
Score = 38.7 bits (86), Expect = 0.009
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 15 MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
M+ F N+ S G D S LDLS+FP+L R G+G+ G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254
Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278
>AF044215-1|AAQ13426.1| 378|Homo sapiens unknown protein.
Length = 378
Score = 38.7 bits (86), Expect = 0.009
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 15 MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
M+ F N+ S G D S LDLS+FP+L R G+G+ G
Sbjct: 197 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 255
Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
PYVGMV +P +EQS +F++ +E
Sbjct: 256 RAPYVGMVTKPANEQSQDFSIHNE 279
>AY739714-1|AAW65983.1| 1224|Homo sapiens HECTD1 protein.
Length = 1224
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 21 NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
NLSR ++ NN +++ T+T PL+ FP+LT G
Sbjct: 180 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 218
>AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin
receptor protein.
Length = 2612
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 21 NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
NLSR ++ NN +++ T+T PL+ FP+LT G
Sbjct: 1567 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 1605
>AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein.
Length = 2168
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 21 NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
NLSR ++ NN +++ T+T PL+ FP+LT G
Sbjct: 1123 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 1161
>AL358780-2|CAI13978.2| 818|Homo sapiens novel protein (FLJ16611)
protein.
Length = 818
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
H HHH + HH Q + + HP HH
Sbjct: 248 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 276
>AK131456-1|BAD18601.1| 762|Homo sapiens protein ( Homo sapiens
cDNA FLJ16611 fis, clone TESTI4011829. ).
Length = 762
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
H HHH + HH Q + + HP HH
Sbjct: 248 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 276
>AB234866-1|BAE93016.1| 827|Homo sapiens DLN-1 protein.
Length = 827
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 82 HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
H HHH + HH Q + + HP HH
Sbjct: 257 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 285
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,568,438
Number of Sequences: 237096
Number of extensions: 871569
Number of successful extensions: 1810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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