Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   3.4  
U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 86  NTTTSGPKRISITNSKRRG*PSTHYSTT 169
           +T+  GP  +SI N   RG P++  STT
Sbjct: 4   HTSQPGPSHVSIVNVPERGGPTSSTSTT 31


>U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical
           protein ZC8.6 protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 148 WSPAPLAVSDGNSLRSRSGGVDVSPPSPKT 59
           +  AP   SD +++ + SG VDV  P P T
Sbjct: 519 YEEAPNYDSDASTVVNTSGNVDVEQPGPST 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,201,551
Number of Sequences: 27780
Number of extensions: 131948
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)