Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   2.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   2.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.5  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYH 56
           S + +SN+S +N  NNY+
Sbjct: 86  SNNYISNISNYNNNNNYN 103


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYH 56
           S + +SN+S +N  NNY+
Sbjct: 324 SNNYISNISNYNNNNNYN 341


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYH 56
           S + +SN+S +N  NNY+
Sbjct: 86  SNNYISNISNYNNDNNYN 103


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 218 RCRLLHHTNIGFRARRW 168
           RC  +HH    F A+ W
Sbjct: 72  RCSDVHHFESSFNAQSW 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 PYVGMVKQPTSEQSEFTMSSE 248
           PYV +++QP S+   F    E
Sbjct: 45  PYVEIIEQPASKALRFRYECE 65


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 PYVGMVKQPTSEQSEFTMSSE 248
           PYV +++QP S+   F    E
Sbjct: 45  PYVEIIEQPASKALRFRYECE 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,647
Number of Sequences: 438
Number of extensions: 1777
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)