Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    27   2.3  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    26   5.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   7.0  

>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 MQSLCEELRNYGTQRDILTLLTFVCQRVALDFESNT 373
           M+ +CE ++NYG+ R    ++    + +ALD  S +
Sbjct: 235 MRKVCERIQNYGSLRSRDGVMKLPSEEIALDLISKS 270


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  DKCPTLAGKPKLFFIQACQGDKLDGGIT 134
           D C  LAGK  L  IQ  Q D +  G T
Sbjct: 193 DACNQLAGKLNLLIIQKGQSDIISDGAT 220


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 10  LIINQIICGITSLLINVQL*LENQSCSLF 96
           L+ N I+CG TSL+    L L+N+   L+
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLY 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,236
Number of Sequences: 5004
Number of extensions: 66484
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)