Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 365  SNTPDITPMHQQKQVP 412
            S + DI+PM +QK +P
Sbjct: 1824 STSSDISPMSEQKSLP 1839



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 433 TPSLVWKKIT 462
           TP++VWKK T
Sbjct: 738 TPTIVWKKAT 747


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 365  SNTPDITPMHQQKQVP 412
            S + DI+PM +QK +P
Sbjct: 1820 STSSDISPMSEQKSLP 1835



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 433 TPSLVWKKIT 462
           TP++VWKK T
Sbjct: 734 TPTIVWKKAT 743


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 574 STVKLDVLNKKVFILSQL*CTYSYWYSILMRRFR 473
           S  K+D  ++ VF L  L     YW++ L R  R
Sbjct: 419 SVSKIDRASRIVFPLFFLAINVFYWFAYLSRSER 452


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 667 LVHCDEKMTNDIFFI 711
           L H D +M  D+FF+
Sbjct: 347 LTHIDARMFKDLFFL 361


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 TRLLLLEKHNSCSWFMQSLCEELRNYGTQRDIL 319
           T L + ++    + FM++L +E R  G  +D+L
Sbjct: 171 TELDVSKRCKDLASFMENLLQETRTPGFGKDVL 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,462
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)