Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00003
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   106   2e-24
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   100   2e-22
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.9  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   3.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    26   5.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.1  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.1  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  106 bits (255), Expect = 2e-24
 Identities = 51/82 (62%), Positives = 60/82 (73%)
 Frame = +1

Query: 262 FRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 441
           FRRPKT    R PKY RKS+P  +R+D Y II  P+ SE+AMKKIED+NTLVF VH  AN
Sbjct: 31  FRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKAN 90

Query: 442 KHHIKAAVKKLYDINVAKVNTL 507
           K  IK AVKKLY ++  K+NTL
Sbjct: 91  KFTIKNAVKKLYSVDAVKINTL 112



 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 VTKALKAQRKVVKGEHGKRVRKIRNLCISADPRRLXL 289
           V KA  AQ+ V KG H K  RK+R       P+ L L
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLEL 39


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  100 bits (239), Expect = 2e-22
 Identities = 49/82 (59%), Positives = 57/82 (69%)
 Frame = +1

Query: 262 FRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 441
           FRRPKT    R PKY RKS+    R+D Y II  P+ SE+AMKKIED+NTLVF VH  AN
Sbjct: 31  FRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKAN 90

Query: 442 KHHIKAAVKKLYDINVAKVNTL 507
           K  IK AV+KLY +   K+NTL
Sbjct: 91  KFTIKEAVRKLYSVEPVKINTL 112



 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 VTKALKAQRKVVKGEHGKRVRKIRNLCISADPRRLXL 289
           V KA  AQ+ V KG H K  +K+R       P+ L L
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQL 39


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 602 NSLYDANFVGNVQCVIISSESYVRFLLTIRPVSVLTLA 489
           ++   +NF  NV C I   +S   F   IRP +V T A
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPDTVRTTA 903


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 79  SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 168
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = +1

Query: 337  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 489
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 223 TWEESTENSQLVHFRRPKTFXPPRHPKYPRKSLPKRNR-MDAYNIIKFPL 369
           +W   TENS       P     P   KY RK+  K N  +D+ +  K P+
Sbjct: 385 SWHGDTENSVKQSLASPSEASLPNLSKYSRKNAKKLNEWLDSLD-FKLPI 433


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 229 EESTENSQLVHFRR-PKTFXPPRHPKYPRKSLPKRNRM 339
           E+S +N ++V   R P+   PP+ P+      PK + M
Sbjct: 114 EQSKQNKRIVPLEREPRAARPPKRPRPMSNYCPKSSLM 151


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 101 AWVWQFWLLL 72
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 265 RRPKTFXPPRHPKYPRKSLPK 327
           ++P TF  P  P+Y +  +PK
Sbjct: 728 KKPPTFLKPNSPEYAKTVIPK 748


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 101 AWVWQFWLLL 72
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,496
Number of Sequences: 5004
Number of extensions: 45185
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)