Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00003
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   118   4e-27
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    118   4e-27
07_01_0885 + 7353926-7354770,7354845-7355487                           27   9.4  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  118 bits (284), Expect = 4e-27
 Identities = 56/84 (66%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 VHFRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTS 435
           V F RPKT    R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   
Sbjct: 50  VTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLK 109

Query: 436 ANKHHIKAAVKKLYDINVAKVNTL 507
           A+K  IKAAVKK+YDI   KVNTL
Sbjct: 110 ADKKKIKAAVKKMYDIQAKKVNTL 133


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  118 bits (284), Expect = 4e-27
 Identities = 56/84 (66%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 VHFRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTS 435
           V F RPKT    R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   
Sbjct: 40  VTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLK 99

Query: 436 ANKHHIKAAVKKLYDINVAKVNTL 507
           A+K  IKAAVKK+YDI   KVNTL
Sbjct: 100 ADKKKIKAAVKKMYDIQAKKVNTL 123


>07_01_0885 + 7353926-7354770,7354845-7355487
          Length = 495

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 228 PCSPFTTFL*ALSALVTGFTTFFCPLIPVFL 136
           P SPFT F  A+SA+       +CP++ + +
Sbjct: 204 PVSPFTVFSYAVSAIRLWKVELYCPVVAMIM 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,718
Number of Sequences: 37544
Number of extensions: 277204
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)