Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00003
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 113 9e-26
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 109 1e-24
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 29 1.9
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co... 29 3.4
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 29 3.4
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 27 7.8
At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to... 27 7.8
At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to... 27 7.8
At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to... 27 7.8
>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
various ribosomal L23a proteins
Length = 154
Score = 113 bits (272), Expect = 9e-26
Identities = 54/84 (64%), Positives = 63/84 (75%)
Frame = +1
Query: 256 VHFRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTS 435
V F RPKT PR PKYP+ S RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV
Sbjct: 42 VTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIR 101
Query: 436 ANKHHIKAAVKKLYDINVAKVNTL 507
A+K IK AVKK+YDI KVNTL
Sbjct: 102 ADKKKIKDAVKKMYDIQTKKVNTL 125
>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
identical to GB:AF034694
Length = 154
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 62/84 (73%)
Frame = +1
Query: 256 VHFRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTS 435
V F RPKT PR KYP+ S RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV
Sbjct: 42 VTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIR 101
Query: 436 ANKHHIKAAVKKLYDINVAKVNTL 507
A+K IK AVKK+YDI KVNTL
Sbjct: 102 ADKKKIKDAVKKMYDIQTKKVNTL 125
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 410 PWSLLFTQVQTSTISRLQSRNSM 478
PWSL+ + Q+ I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610
>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
contains Pfam profile PF00276: ribosomal protein L23
Length = 178
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 433 SANKHHIKAAVKKLYDINVAKVNTLTGLMVRRKR 534
SA+K IK ++ LY +V KVNTL ++KR
Sbjct: 38 SASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKR 71
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 410 PWSLLFTQVQTSTISRLQSRNSM 478
PWSL+ + Q+ I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 49 TFS*EGCGNSSQNCQTQASSFQIEDC---TEAQKDWD*GTKKSSETCY 183
TF+ CGN Q + + +S+ C ++A+K ++ G++ TC+
Sbjct: 891 TFNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEALFSTCF 938
>At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 353
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 608 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPVSVLTLATFIS*SFLTAALIWCLF 438
+W +D + V II+S YV T+R L LA F S L A ++ +F
Sbjct: 247 VWIIRFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVF 303
>At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 268
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 608 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPVSVLTLATFIS*SFLTAALIWCLF 438
+W +D + V I++S YV T+R L LA F S L A ++ +F
Sbjct: 158 VWIIHFDITLITIVTMAIVTSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF 214
>At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 360
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 608 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPVSVLTLATFIS*SFLTAALIWCLF 438
+W +D + V I++S YV T+R L LA F S L A ++ +F
Sbjct: 250 VWIIHFDITLITIVTMAIVTSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF 306
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,774
Number of Sequences: 28952
Number of extensions: 237068
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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