Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00002
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0971 + 24949137-24950534                                         28   8.2  
01_07_0252 - 42296138-42296281,42296527-42296613,42297043-422971...    28   8.2  

>12_02_0971 + 24949137-24950534
          Length = 465

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 2   ARARTAYIGTP---ASSWTRRRILRGTSGPERSGRSQRPRDLA*EC 130
           A AR  Y+G+     + W  RR   G +GP R+G + R   +A  C
Sbjct: 305 AEARVVYVGSSDGAVTHWQWRRGGAGVAGPPRNGGALRGHRMAVLC 350


>01_07_0252 -
           42296138-42296281,42296527-42296613,42297043-42297135,
           42297267-42297341,42297480-42297575,42297987-42298133,
           42298225-42298296,42298912-42298959,42299507-42299607,
           42300226-42300337,42300506-42300590,42300693-42300848,
           42300956-42301047,42301155-42301238,42301676-42301726,
           42302227-42302295,42302417-42302476,42303305-42303535
          Length = 600

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 245 WRFRFNSTSQSLGMDKGYKLGSTHSHVPIFD 337
           W F+ +  +     D G   GST SH+ +FD
Sbjct: 249 WMFKLSEWAHFSSYDVGLHSGSTASHILVFD 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,491
Number of Sequences: 37544
Number of extensions: 366354
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)