Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00002
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical p... 30 1.4
Z48055-10|CAA88135.1| 573|Caenorhabditis elegans Hypothetical p... 29 4.2
Z36282-3|CAA85289.1| 573|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z83219-8|CAD57688.1| 455|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z80217-11|CAD57698.1| 455|Caenorhabditis elegans Hypothetical p... 28 5.6
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 27 9.8
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 27 9.8
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 27 9.8
>Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +1
Query: 1 GTSKNG-LYRNTGFLLDEKTYPSRNVGSGAFRAITTST*PGLGM*PST----WPCICCTE 165
G+S+NG +Y F+ D YPS + A +TT+T PG PST P + T
Sbjct: 392 GSSRNGTMYELNLFIADWIDYPSNTTVAPAAPTVTTTT-PGT---PSTAAPAAPTVTTTT 447
Query: 166 P--KTKQQSKIVMLSSHCVLLI 225
P T + + +LS +LLI
Sbjct: 448 PGTTTSPSAHLSLLSMFSLLLI 469
>Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +1
Query: 1 GTSKNG-LYRNTGFLLDEKTYPSRNVGSGAFRAITTST*PGLGM*PST----WPCICCTE 165
G+S+NG +Y F+ D YPS + A +TT+T PG PST P + T
Sbjct: 392 GSSRNGTMYELNLFIADWIDYPSNTTVAPAAPTVTTTT-PGT---PSTAAPAAPTVTTTT 447
Query: 166 P--KTKQQSKIVMLSSHCVLLI 225
P T + + +LS +LLI
Sbjct: 448 PGTTTSPSAHLSLLSMFSLLLI 469
>Z48055-10|CAA88135.1| 573|Caenorhabditis elegans Hypothetical
protein K10G9.1 protein.
Length = 573
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 DEKTYPSRNVGSGAFRAITTST*PGLGM*PST--WPCICCT 162
DEK Y + VGS A + +T +T P M ST W I C+
Sbjct: 254 DEKKYITEKVGSVAVKNMTLTTLPWRDMMTSTAVWAIIICS 294
>Z36282-3|CAA85289.1| 573|Caenorhabditis elegans Hypothetical
protein K10G9.1 protein.
Length = 573
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 DEKTYPSRNVGSGAFRAITTST*PGLGM*PST--WPCICCT 162
DEK Y + VGS A + +T +T P M ST W I C+
Sbjct: 254 DEKKYITEKVGSVAVKNMTLTTLPWRDMMTSTAVWAIIICS 294
>Z83219-8|CAD57688.1| 455|Caenorhabditis elegans Hypothetical
protein C31C9.1b protein.
Length = 455
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GTSKNG-LYRNTGFLLDEKTYPSRNVGSGAFRAITTST*PGLGM*PS 138
G+S+NG +Y F+ D YPS + A +TT+T PG PS
Sbjct: 392 GSSRNGTMYELNLFIADWIDYPSNTTVAPAAPTVTTTT-PGTTTSPS 437
>Z80217-11|CAD57698.1| 455|Caenorhabditis elegans Hypothetical
protein C31C9.1b protein.
Length = 455
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GTSKNG-LYRNTGFLLDEKTYPSRNVGSGAFRAITTST*PGLGM*PS 138
G+S+NG +Y F+ D YPS + A +TT+T PG PS
Sbjct: 392 GSSRNGTMYELNLFIADWIDYPSNTTVAPAAPTVTTTT-PGTTTSPS 437
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 158 QQIQGHVEGYIPRPGHVDVVIARNAPDPT 72
QQ Q H+ G + GH V+ AP PT
Sbjct: 832 QQYQNHIHGSVVSGGHNHQVVRPIAPTPT 860
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 LGSTHSHVPIFDCAIIEFGGYLXXXXXRLGV*YR-RQLS---SILRVL*GSFTLWSPNHW 469
L ++++ PIFD F GY L +R +QLS +L + W+P W
Sbjct: 673 LATSYNDTPIFDNKTFAFVGYTAMLPTSLKYNHRFKQLSKSFEMLEMTKPDNGWWAP-EW 731
Query: 470 WLVS 481
WL+S
Sbjct: 732 WLMS 735
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 LGSTHSHVPIFDCAIIEFGGYLXXXXXRLGV*YR-RQLS---SILRVL*GSFTLWSPNHW 469
L ++++ PIFD F GY L +R +QLS +L + W+P W
Sbjct: 673 LATSYNDTPIFDNKTFAFVGYTAMLPTSLKYNHRFKQLSKSFEMLEMTKPDNGWWAP-EW 731
Query: 470 WLVS 481
WL+S
Sbjct: 732 WLMS 735
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,675
Number of Sequences: 27780
Number of extensions: 328446
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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