Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0576.Seq
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 28   6.6  
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 439 YKMLCISVCNPNNYLVVSLTLTRINEHFNIFYRNCCSREPHTGCREFLHTHV 594
           YK  C   C    Y+ V    +R+  H    YR+ C  + +T       THV
Sbjct: 76  YKHACRRTCGHATYMHVDTIQSRMQTHMQTCYRHACRHDTNTHADAHADTHV 127


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 270 KSELIQDELLFFQLNLHRA--FDCISLEHQISGRWRGVDPP 154
           K E I  E    + NLHR   F  +  E+Q++ +WRGV  P
Sbjct: 728 KPEAIPIEFECVEENLHRVTYFPKVEGEYQLAIKWRGVHVP 768


>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 360 CRKRPKY*CINTTNARLHSNNYF-KLCPPFQKSELIQDEL 244
           C +RP   C N  N+R +  +   K   PF+KS+L +D+L
Sbjct: 112 CVQRPWKLCRNDRNSRQNRRSVLGKKNRPFEKSDLTKDQL 151


>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 330 NTTNARLHSNNYF-KLCPPFQKSELIQDELLFFQLNLHR 217
           N TN+R +  +   K   PF+KSEL +D+L  + ++L R
Sbjct: 671 NDTNSRQNRRSMLGKKNRPFEKSELTKDQLAGYSVSLIR 709


>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 394 LQIVHNNAKLLLQI*YKMLCISVCNPNNYLVVSLTLTRINEHFNIFYRNCCSREPHTGCR 573
           +++ H N    LQ   K L + V      +        I++ F  +  +   R+P+  CR
Sbjct: 33  VKVDHQNTLNTLQFAMKALTLLVLLVTGAICTVTVTADIHDDFCKYKPDGEYRDPYDACR 92

Query: 574 EFLHTH 591
            F+H H
Sbjct: 93  GFIHCH 98


>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 237 FQLNLHRAFDCISLEHQISGRWRGVDPPY 151
           FQ   H  F   S+   I G W G DPP+
Sbjct: 125 FQSEYHTNFQPPSMFDYIDGAWVGADPPH 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,649
Number of Sequences: 59808
Number of extensions: 327785
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)