Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0576.Seq
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40390.1 68415.m04980 expressed protein                             28   4.1  
At1g26330.1 68414.m03211 hypothetical protein                          27   7.2  
At5g25050.1 68418.m02969 integral membrane transporter family pr...    27   9.5  

>At2g40390.1 68415.m04980 expressed protein
          Length = 496

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 258 IQDELLFFQLNLHRAFDCISLEHQI 184
           + DE LFF LN H+    I L H+I
Sbjct: 243 LNDERLFFSLNYHQLEGVIQLNHRI 267


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 373  NSYEIVMLQIVHNNAKLLLQI*YKMLCISVCNPNNYLVV----SLTLTRINEHFN 525
            N+  IV ++  H +    LQ    + C+ VC+PNN +      +L +  +N H++
Sbjct: 914  NAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHWS 968


>At5g25050.1 68418.m02969 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains 7 transmembrane domains;
           contains Pfam PF03092: BT1 family; contains TIGRFAMS
           TIGR00788: folate/biopterin transporter
          Length = 499

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 445 MLCISVCNPNNYLVVSLTLTRINEHFNIFY 534
           M C  V  P+ Y+ +SLTL  +N H  +FY
Sbjct: 256 MKCSDVWRPSLYMYISLTL-GLNIHEGLFY 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,297
Number of Sequences: 28952
Number of extensions: 218631
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)