Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0575.Seq
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   131   6e-31
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    35   0.067
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       29   3.3  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    29   3.3  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    29   3.3  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    28   5.8  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  131 bits (316), Expect = 6e-31
 Identities = 61/86 (70%), Positives = 71/86 (82%)
 Frame = +3

Query: 252 GNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 431
           G NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NTG
Sbjct: 70  GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129

Query: 432 LGPEKTSFFQALSIPTKISKGTIEII 509
           +GPEKTSFFQAL IPTKI++GTIEI+
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEIL 155



 Score =  106 bits (255), Expect = 1e-23
 Identities = 43/69 (62%), Positives = 60/69 (86%)
 Frame = +1

Query: 46  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 225
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 226 MRKAIKDHL 252
           +RKA++ HL
Sbjct: 61  IRKALRGHL 69



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 41/62 (66%), Positives = 53/62 (85%)
 Frame = +2

Query: 509 NDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKF 688
           NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+  E+LR +F
Sbjct: 156 NDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRF 215

Query: 689 PS 694
            S
Sbjct: 216 LS 217


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 267 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 443
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 444 KTSFFQALSIPTKISKGTIEIITMY 518
                + L +PTK+ KG   +IT+Y
Sbjct: 150 MEPQLRKLGLPTKLDKG---VITLY 171



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +1

Query: 19  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 198
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 199 IVLMGKNTMMRKAI 240
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 133 VGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSR 294
           V ADN   +++QQI   +R +   ++ +N  +RK + + +E I+  +   H+SR
Sbjct: 547 VKADN---KKLQQILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKRNWHSSR 597


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 541 LVTGLQDVYIVMISIVPFEILVGIERAWKKEVFSGPRP 428
           L+   QDVY+ + S++PF++L+  +R    E+ + P P
Sbjct: 239 LLVPSQDVYLPVHSVLPFQVLIVKQRG--TEIVNMPNP 274



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 295  PLMCGNSFSRAGLFPGGL*WLCASLCFFP*ARYWSHVARYGSAASVAS 152
            P  C  +F+R       + WL  S  F P   Y   + R+ S+ S +S
Sbjct: 1530 PFECQVAFTRRSKIISAVNWLTVSAVFSPVFGYGCEIRRFDSSVSTSS 1577


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 1   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 114
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 409 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 299
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 348 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 497
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,983,184
Number of Sequences: 27780
Number of extensions: 394215
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)