Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0574.Seq
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    36   0.009
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.3  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   5.2  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   5.2  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.9  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   6.9  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.9  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   6.9  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 705 NTGINFSKYEDIPVEASG 758
           +TGINF KY+DIPVE SG
Sbjct: 145 STGINFEKYDDIPVEVSG 162


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 534 APRNDRWKEPEPRAEERSNSRWPSDDVR 617
           APR  R+   E   +ERS SR P+ D R
Sbjct: 39  APRESRYYRKEEHLQERSRSRSPARDSR 66


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 677 TGTIAVRHWQHRDQFLQI 730
           TG I VRHW+H D   ++
Sbjct: 104 TGMIEVRHWEHIDALSEL 121


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 610 MCAELDLAKTRMIGQYRYLAMNDRNYCCSALATPGSISPNTRI 738
           M AE+D A+    GQ+R L   +    CS L     +  ++RI
Sbjct: 859 MVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRI 901


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 106  ILVGNITHITTKRYVFLGTLLQKYLKHSLQ*ILH 5
            +L   IT  T + Y+F+G +  + LKH +   +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 495 ASRRAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPS 605
           A+  A E ++ PP      W E    A  R + RW S
Sbjct: 118 AAMDAAEANFSPPNSTEHSWLELTQAAFNRMSGRWDS 154


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   CAKFIVDCVLNIFGAKFPKK 63
           CA+FI+DC    F  +F K+
Sbjct: 295 CARFILDCDRKYFNTEFEKR 314


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 74  GSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEES 235
           G+ ++N T    +    Q  G DL+P +   T  Y     RR      D  EES
Sbjct: 415 GNIVTNGTGLRSSQSSSQNRGFDLEPYSEVFTASYPRRQARRTRTIQLDSDEES 468


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 APKSTGRYIPPHLRRQLQATSDQG 226
           AP + G++IPP + ++L    D G
Sbjct: 189 APVNAGKFIPPGVGKRLATVDDSG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,561
Number of Sequences: 5004
Number of extensions: 55114
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)