Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0574.Seq
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       37   2e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.021
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.79 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 483 GPTRASRRAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVP- 659
           G T  + + ++ D       ND +   + R + R  +    +D     ++K +  +  P 
Sbjct: 99  GRTGFNNKNKDGDDNNDYEDND-YGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPE 157

Query: 660 LPRDERQELLLFGTG-NTGINFSKYEDIPVEASGD 761
           LP DE+    LF  G   GINF KY++I V  SGD
Sbjct: 158 LPNDEKS---LFENGVEIGINFDKYDNIQVNVSGD 189


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +3

Query: 474 TRTGPTRASRRAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWT 653
           T T PTR  R+ R+ D E    R+D     +   EE  + R  S+  +R +  +D +   
Sbjct: 258 TTTIPTRRLRKRRQNDGEGADDRDD-----DEENEEEEDGRGQSEAEKRLKLDEDADGAV 312

Query: 654 VPLPRDERQELLLFGTGN 707
            PL R++ +    + T N
Sbjct: 313 SPLRREKDRGSREYPTSN 330


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 575 SSWLRLFPAVIPWCRWFIILLT 510
           S+W R F A+I W  +FI++ T
Sbjct: 399 SAW-RHFAAIIEWLSFFIVIFT 419


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 143 LQPQAPKSTGRYIPPHLRRQLQATSDQGEESKRSSLDTVLVSHGTTVHH 289
           +QP+  K   R + PH   + +       +++  S  T   S GT + H
Sbjct: 144 IQPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGTTTTSTGTRLLH 192


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 658 RYLAMNDRNYCCSALATPGSIS 723
           R++ M+   +CC  L  PGS S
Sbjct: 5   RHVVMSCCCWCCDNLGGPGSSS 26


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 147 SPRLLRVLVATYPRICVGSCRQPLIKGK 230
           SPR  R+LVAT   +    C  PL+  K
Sbjct: 178 SPRRARLLVATVWILSFVICFPPLVGWK 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,108
Number of Sequences: 438
Number of extensions: 4724
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)