Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0574.Seq
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 37 0.013
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 37 0.013
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.013
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.052
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 34 0.12
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 33 0.16
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.28
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.28
At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive near... 31 1.1
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 31 1.1
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 30 2.0
At1g24300.1 68414.m03066 GYF domain-containing protein contains ... 30 2.0
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 29 2.6
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 3.4
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 3.4
At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protei... 29 3.4
At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protei... 29 3.4
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 29 4.5
At5g13280.1 68418.m01525 aspartate kinase identical to aspartate... 29 4.5
At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive, put... 29 4.5
At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containi... 28 6.0
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 28 6.0
At5g53440.1 68418.m06641 expressed protein 28 7.9
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 28 7.9
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 28 7.9
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +3
Query: 657 PLPRDERQELLLFGTGNTGINFSKYEDIPVEASG 758
P D E + NTGINF YEDIPVE SG
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSG 143
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +3
Query: 657 PLPRDERQELLLFGTGNTGINFSKYEDIPVEASG 758
P D E + NTGINF YEDIPVE SG
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSG 143
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = +3
Query: 588 NSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFGTGNTGINFSKYEDIPVEASGD 761
N+R D R END + P P Q+ NT INF YEDIP+E SGD
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQD-------NTVINFDAYEDIPIETSGD 152
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 651 TVPLPRDERQELLLFGTGNTGINFSKYEDIPVEASGD 761
T P D + + NT INF YEDIP+E SGD
Sbjct: 103 TNPFGNDGNADPAVNEQENTVINFEAYEDIPIETSGD 139
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 486 PTRASRRAREEDYEPPAPRNDRWKEPEPRAE----ERSNSRWPSDDVRRTRS 629
P R R+R DY P PR + PR E RS SR P+ D R RS
Sbjct: 151 PRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRS 202
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.5 bits (73), Expect = 0.16
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +3
Query: 363 RSRIRSATPAQGPRSRQWISEWRTRALE*IREME*S*TRTGPTRASRR---AREEDYEPP 533
RSR RS + PR R+ S +R+R+ IR PT RR A P
Sbjct: 260 RSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRR------HRRPTHEGRRQSPAPSRRRRSP 313
Query: 534 APRNDRWKEPEPRAEERSNSRWPSDDVRRTRS 629
+P R + P P A R R PS RR RS
Sbjct: 314 SPPARRRRSPSPPARRR---RSPSPPARRHRS 342
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 366 SRIRSATPAQGPRSRQWISEWRTRALE*IREME*S*TRTGPTRASRRA-REEDYEPPAPR 542
SR S +P++G + S R R++ R S +R+ ++SRR+ + P PR
Sbjct: 197 SRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 256
Query: 543 NDRWKEPEPRAEERSNSRWPSDDVRRTRSR 632
+ + + P PR RS SR P V++ S+
Sbjct: 257 S-KSRSPSPR-RSRSRSRSPLPSVQKEGSK 284
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 366 SRIRSATPAQGPRSRQWISEWRTRALE*IREME*S*TRTGPTRASRRA-REEDYEPPAPR 542
SR S +P++G + S R R++ R S +R+ ++SRR+ + P PR
Sbjct: 197 SRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 256
Query: 543 NDRWKEPEPRAEERSNSRWPSDDVRRTRSR 632
+ + + P PR RS SR P V++ S+
Sbjct: 257 S-KSRSPSPR-RSRSRSRSPLPSVQKEGSK 284
>At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive nearly
identical to gi:2257743
Length = 544
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 493 GPRDVHVRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 669
G V V+ N G +SR K+V L LD+A TRM+GQY +LA
Sbjct: 357 GDIPVRVKNSYNPTAPGTVITRSRDMS-KAVLTSIVLKRNVTMLDIASTRMLGQYGFLA 414
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +2
Query: 65 VPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ--GEESK 238
+ LGS+ S + N+N + + G + TG Y P + ++ + Q E +
Sbjct: 167 IELGSSESIIQNRNFINRVKSIFGSGKTTKHTNQTGSYPKPAVSDHSKSGNQQFGSERKR 226
Query: 239 RSSLDTVLVSHGTTVHHSEAAL 304
R L+T V+ T H A L
Sbjct: 227 RRKLETTRVAAATKEKHHPAVL 248
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 86 SNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ 223
S N + + + L + P+S+ +Y+ PHLR Q ++ S++
Sbjct: 232 SETVNYHDSPSSLEKVDTPLHERKPESSSKYVAPHLRSQAKSESEE 277
>At1g24300.1 68414.m03066 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1417
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = +3
Query: 390 AQGPRSRQWISEWRTRALE*IREME*S*TRTGPTRASRRAREEDYEPPAPRNDRWKEP-- 563
++ +R+W E R L R+++ T S R E A +DRW +
Sbjct: 84 SENETNRRWREEERETGLLGARKVDRRKTERRIDNVSSRETGEVKTTAA--SDRWNDVNS 141
Query: 564 -----EPRAEERSNSRW-PSDDVRRTRSRKDENDWTVPLPRDERQELL 689
EPR + + +SRW P D + R K E + P+ E Q ++
Sbjct: 142 RAAVHEPRRDNKWSSRWGPDDKEKEARCEKVEINKDKEEPQSESQSVV 189
>At1g27430.1 68414.m03343 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1531
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Frame = +3
Query: 405 SRQWISEWRTRALE*IREME*S*TRTGPTRASRRAREEDYEPPAPRNDRWKEP------- 563
SR+W E R L R+++ T S +RE A +DRW +
Sbjct: 89 SRRWREEERETGLLGARKVDRRKTERRIDSVS--SRETGDIKNAAASDRWNDVNSRAAVH 146
Query: 564 EPRAEERSNSRW-PSDDVRRTRSRKDENDWTVPLPRDERQELL 689
EPR + + +SRW P D + R K + + P+ E Q ++
Sbjct: 147 EPRRDNKWSSRWGPDDKEKEARCEKVDINKDKEEPQSESQSVV 189
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 492 RASRRAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSD-DVRRTRSR 632
R+ R+ R E PP R P E+R SR P + RR RSR
Sbjct: 263 RSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSR 310
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 492 RASRRAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSD-DVRRTRSR 632
R+ R+ R E PP R P E+R SR P + RR RSR
Sbjct: 263 RSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSR 310
>At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protein
contains weak similarity to Malonyl-CoA decarboxylase,
mitochondrial precursor (EC 4.1.1.9) (MCD)
(Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
profile PF05292: Malonyl-CoA decarboxylase (MCD)
Length = 517
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 138 WTCSPRLLRVLVATYPRICVGSCRQPLIKGKSLSAQA 248
W SPRLL VL R+C Q +GK+L + A
Sbjct: 417 WATSPRLLPVLEPILMRLCARYLLQEKKRGKALDSVA 453
>At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protein
contains weak similarity to Malonyl-CoA decarboxylase,
mitochondrial precursor (EC 4.1.1.9) (MCD)
(Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
profile PF05292: Malonyl-CoA decarboxylase (MCD)
Length = 518
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 138 WTCSPRLLRVLVATYPRICVGSCRQPLIKGKSLSAQA 248
W SPRLL VL R+C Q +GK+L + A
Sbjct: 418 WATSPRLLPVLEPILMRLCARYLLQEKKRGKALDSVA 454
>At5g42950.1 68418.m05236 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1714
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 376 EARHQRRDRGRDSGSQNGEPERWNESEKWN 465
E R DR DSG+++ PE+ ES KWN
Sbjct: 144 EQRRGPNDRWTDSGNKDAAPEQRRES-KWN 172
>At5g13280.1 68418.m01525 aspartate kinase identical to aspartate
kinase [Arabidopsis thaliana] GI:4376158
Length = 569
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 493 GPRDVHVRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 669
G V V+ N + G K+R KS+ L LD+A TRM+GQ +LA
Sbjct: 361 GEIPVRVKNSYNPKAPGTIITKTRDMT-KSILTSIVLKRNVTMLDIASTRMLGQVGFLA 418
>At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive,
putative similar to aspartate kinase gi:2257743
(Arabidopsis thaliana)
Length = 559
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 505 VHVRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 669
V V+ N G +SR K+V L LD+ TRM+GQY +LA
Sbjct: 362 VRVKNSYNPTAPGTVITRSRDMS-KAVLTSIVLKRNVTMLDITSTRMLGQYGFLA 415
>At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 609
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 489 TRASRRAREEDYEPPAPRNDRWK--EPEPRAEERSNSRWPSDDVRRTRS 629
+R S E++ + P+P+ D+W EP P R SR+ D R S
Sbjct: 43 SRCSMVLEEDEKKSPSPKEDKWPFFEPGPNDLNRVLSRFLRDPETRKLS 91
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.3 bits (60), Expect = 6.0
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +3
Query: 363 RSRIRSATPAQGPRSRQWISEWRTRALE*IREME*S*TRTGPTRASRRAREEDYEPPAPR 542
R ++ A A R RQW E R R E R+ E + +E++ E +
Sbjct: 467 RRKLEDAERAYQTRLRQW--ERREREKEKERQYE-------------KEKEKEKERKRKK 511
Query: 543 NDRWKEPEPRAEERSNSRW---PSDDVRRTRSRKDENDWTVPLPRDE 674
R++E E ++ S RW D+ RR + R+ E+D L +E
Sbjct: 512 EIRYEEEEEEDDDDSRRRWHRAALDERRRRQLREKEDDLADRLKEEE 558
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 504 RAREEDYEPPAPRNDRWKE---PEPRAEERSNSRWPSDDVRRTRSRKD-END 647
R R DY+ + RN+R +E R ER R D R R R+D E+D
Sbjct: 303 RERNRDYDRESDRNERDRERTRDRDRDYERDRDRDRDRDRERDRDRRDYEHD 354
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 504 RAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTV 656
R+R DYE R+DR R+ RS +R S K+++ TV
Sbjct: 292 RSRRNDYEDDRSRHDRRSRSRSRSRSRSVQIEREPTPKRDSSNKEKSAVTV 342
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 504 RAREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTV 656
R+R DYE R+DR R+ RS +R S K+++ TV
Sbjct: 300 RSRRNDYEDDRSRHDRRSRSRSRSRSRSVQIEREPTPKRDSSNKEKSAVTV 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,486
Number of Sequences: 28952
Number of extensions: 310841
Number of successful extensions: 1037
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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