Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0573.Seq
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    36   0.003
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    31   0.16 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   2.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   4.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.1  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    25   8.1  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 366 RCKTEWYCGRECQVQQWPKHKELC 437
           RC+   YC +ECQ Q WP H   C
Sbjct: 500 RCRRTKYCSKECQHQAWPGHSRWC 523


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 CKTEWYCGRECQVQQWPKHKELC 437
           CK   YC + CQ   WP HK  C
Sbjct: 65  CKIIHYCSKGCQKADWPFHKLEC 87


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 221 NIFAWTVRKILENGEETS 274
           NI AW VRK+ EN + TS
Sbjct: 33  NIRAWVVRKVKENDKRTS 50


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 218 SWVFANDLVRLCICFTYASFICGTTSM 138
           S++  + L+R+C C+TY   I G +S+
Sbjct: 147 SYICFSSLIRICHCWTYFIRIMGLSSL 173


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 199 SLAKTQLEYFRMDGSEDSRKWRRNF*IHTLVTRPSRSTAGELNALNVERRLAKNV 363
           +L + +L  + +DG +D  KW +N    T V+R   ST    +A+++  RL + +
Sbjct: 399 TLVEVKLHPWTLDGLKDPEKWLQNTDPST-VSRVEVSTDEVASAISLVGRLRRKL 452


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 361 HFLQAFSPHLAHLAPPPS 308
           HF   F+P    LAPPPS
Sbjct: 37  HFNPQFTPFTKSLAPPPS 54


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 381 WYCGRECQVQQWPKHKEL 434
           ++CG+EC    W  HK L
Sbjct: 35  YFCGQECFRNSWNIHKHL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,483
Number of Sequences: 5004
Number of extensions: 40618
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)