Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0573.Seq
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)              38   0.008
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)                    37   0.011
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   36   0.024
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.024
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)                34   0.074
SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)                 34   0.098
SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)               34   0.098
SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.098
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)               33   0.23 
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)               32   0.40 
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   32   0.40 
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                31   0.69 
SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061)                 30   1.6  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_34239| Best HMM Match : FAD_binding_7 (HMM E-Value=2.4)             28   6.4  
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 28   6.4  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    28   6.4  
SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)                 28   6.4  
SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)                    27   8.5  

>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQWPKHKELCDQYA 449
           S C + WYC +ECQ + W  HK+ C + A
Sbjct: 69  SNCLSAWYCSKECQGEAWGSHKKRCTKMA 97


>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
          Length = 537

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQWPKHKELC 437
           +RC+   YC R CQ   WPKHK  C
Sbjct: 28  TRCRGVLYCSRSCQSIHWPKHKVTC 52


>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1888

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 363  SRCKTEWYCGRECQVQQWPKHKELC 437
            S C +  YCG++CQ++ W KHK  C
Sbjct: 1855 SACNSRGYCGQKCQLKDWGKHKTDC 1879


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQWPKHKELC 437
           SRCK+  YC ++C    W  HK +C
Sbjct: 22  SRCKSTMYCSKDCPRSHWKHHKAIC 46


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 369 CKTEWYCGRECQVQQWPKHKELC 437
           CK   YC R+CQ Q WP+HK  C
Sbjct: 155 CKIP-YCSRKCQQQHWPQHKTTC 176


>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
          Length = 281

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQWPKHKELCDQ 443
           SRCK   YCG  CQ   W  HK  C++
Sbjct: 65  SRCKFARYCGASCQRAAWRIHKSECER 91


>SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)
          Length = 84

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 366 RCKTEWYCGRECQVQQWPKHKELCD 440
           RC  E YC R CQ + W +HK +C+
Sbjct: 47  RCG-ETYCSRGCQTKDWKEHKRICN 70


>SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)
          Length = 145

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 366 RCKTEWYCGRECQVQQWPKHKELCD 440
           RC  E YC R CQ + W +HK +C+
Sbjct: 108 RCG-ETYCSRGCQTKDWKEHKRICN 131


>SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 366 RCKTEWYCGRECQVQQWPKHKELCD 440
           RC  E YC R CQ + W +HK +C+
Sbjct: 113 RCG-ETYCSRGCQTKDWKEHKRICN 136


>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
          Length = 200

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQWPK-HKELCDQYA 449
           S+CK+ +YC R+ QV  W   HK  C+Q A
Sbjct: 162 SKCKSVFYCSRDHQVFGWKTGHKTACNQLA 191


>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
          Length = 167

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQW-PKHKELC 437
           +RCK  +YC + C+++ W  +H+E C
Sbjct: 33  TRCKEVFYCSKSCKLKAWNSRHREEC 58


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 363 SRCKTEWYCGRECQVQQW-PKHKELC 437
           +RCK  +YC + C+++ W  +H+E C
Sbjct: 407 TRCKEVFYCSKSCKLKAWNSRHREEC 432


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 369  CKTEWYCGRECQVQQWPKHKELC 437
            C T +YC REC+   W +HK++C
Sbjct: 3543 CYT-YYCTRECRRAHWREHKKVC 3564


>SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061)
          Length = 125

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +1

Query: 7   LTETMLDQIPPLGELKTFLCRLSVGDYSGLHNRTNGVKNPGCTLIEVVPQIKDAYVKQIH 186
           L E +LDQIP L +L+ +L  L++ +                 ++E VP+++D  +KQ  
Sbjct: 5   LNEILLDQIPSLVDLQRYLEHLAIMEPPATKRD---------IILEQVPEVRDNLIKQNT 55

Query: 187 KRTKSLAKTQLEYFRMDGSEDSRK 258
            +   +A  Q + +      D RK
Sbjct: 56  GQWLKIADYQRKNYFTPSDSDVRK 79


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 363  SRCKTEWYCGRECQVQQWPKHKELC 437
            S C+   YC + CQ     KHK LC
Sbjct: 1397 SNCRVASYCDQTCQKMHLAKHKLLC 1421


>SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 384 YCGRECQVQQWPKHKELCDQY 446
           YC  EC++  WP+H+  C QY
Sbjct: 144 YCSPECRILHWPEHRLDC-QY 163


>SB_34239| Best HMM Match : FAD_binding_7 (HMM E-Value=2.4)
          Length = 288

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 260 HFLESSEPSMRKYSSWVFANDLVRLCICFTYASFIC 153
           +F ++ EP+   Y  W    + +   + F YASFIC
Sbjct: 195 YFPDNQEPAFSNYRLW----ESLGFVVAFAYASFIC 226


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 385 YHSVLHLEHFL-QAFSPHLAHLAPP--PSSARAVSLAYES 275
           +HS++ +  FL  +F P  AH APP  P+  R  SL+ E+
Sbjct: 788 HHSIITIPDFLISSFRPTSAHSAPPCTPALDREDSLSLEA 827


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +1

Query: 73  SVGDYSGLHNRTNGVKNPGCTLIEVVPQIKDAYVKQIHKRTKSLAK-TQLEYFRMDGSED 249
           S+G  S +   T    +P     +V P + D Y K   K+  S  + T L  F    ++ 
Sbjct: 313 SIGRMSTVRTATPNPPHPTPQTAQVSPLLADKYKKYCEKKIASEGESTLLMMFTEFCAKI 372

Query: 250 SRKWRRNF*IHTLVTRPS---RSTAGEL 324
            + W R   +H + T P+    +T GE+
Sbjct: 373 IQDWWRQLQLHPIPTYPAPPPPTTRGEM 400


>SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)
          Length = 458

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 73  SVGDYSGLHNRTNGVKNPGCTLIEVVPQIKDAYVKQIHKR-TKSLAKTQLEYFRMDG 240
           S  D S +  +       G    E V + +D Y+ Q+H R  +  A+T+ E  R+ G
Sbjct: 151 STRDVSDMRQQLETTHKSGMEERETVARARDEYLAQLHDRLVRQQAETEEERTRLQG 207


>SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)
          Length = 411

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 391 PQYHSVLHLEHFLQAFSPHLAHLAPPPSSARAV 293
           P Y S+   + F Q   PH+    PP SS + V
Sbjct: 143 PYYESIKLFKSFYQPVFPHIIFCGPPDSSNKHV 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,139
Number of Sequences: 59808
Number of extensions: 297419
Number of successful extensions: 748
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)