Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0573.Seq
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.55 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.72 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +1

Query: 283 TLVTRPSRSTAGELNALNVERRLAKNVLDARQSGIVEENVKCNSGRNTKNFATNMRTVS 459
           T +  PSR T G++N    E+ +  N+L    + I         G         +R++S
Sbjct: 13  TFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSIS 71


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 TLVTRPSRSTAGELNALNVERRLAKNVL 366
           T +  PSR T G++N    E+ +  N+L
Sbjct: 13  TFLLHPSRCTQGKVNYREKEKEVLDNIL 40


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  LHNRTNGVKNPGCTLIEVVPQI 159
           + NR   +   GCT+  V+PQ+
Sbjct: 220 MFNRDLIIVQTGCTITRVIPQV 241


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  LHNRTNGVKNPGCTLIEVVPQI 159
           + NR   +   GCT+  V+PQ+
Sbjct: 220 MFNRDLIIVQTGCTITRVIPQV 241


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 60  PLQALGGRLLRTSQSDQWR*EP 125
           PL  LGG L+    +  WR +P
Sbjct: 536 PLSLLGGPLVMVCSAPVWRFQP 557


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
 Frame = -1

Query: 188 LCICFTYAS---FIC 153
           +C+CF YAS   F+C
Sbjct: 369 VCMCFIYASLLEFVC 383


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
 Frame = -1

Query: 188 LCICFTYAS---FIC 153
           +C+CF YAS   F+C
Sbjct: 338 VCMCFIYASLLEFVC 352


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
 Frame = -1

Query: 188 LCICFTYAS---FIC 153
           +C+CF YAS   F+C
Sbjct: 389 VCMCFIYASLLEFVC 403


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
 Frame = -1

Query: 188 LCICFTYAS---FIC 153
           +C+CF YAS   F+C
Sbjct: 338 VCMCFIYASLLEFVC 352


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 112 GVKNPGCTLIE 144
           G+  PGCT+IE
Sbjct: 93  GLLKPGCTIIE 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,567
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)