Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0573.Seq
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 38 0.007
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 32 0.24
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 32 0.32
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 31 0.57
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 31 0.75
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 29 1.7
At2g04235.1 68415.m00411 expressed protein weak similarity to ne... 29 2.3
At5g64440.1 68418.m08095 amidase family protein low similarity t... 29 3.0
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 28 5.3
At5g43690.1 68418.m05340 sulfotransferase family protein similar... 27 9.2
At4g25390.1 68417.m03652 protein kinase family protein contains ... 27 9.2
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge... 27 9.2
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 37.5 bits (83), Expect = 0.007
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQWPKHKELC 437
S C+ WYCG CQ +W H++ C
Sbjct: 69 SACQVVWYCGSSCQKSEWKLHRDEC 93
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQWPK-HKELC 437
S+CK+ YC +CQ+ W + HKE C
Sbjct: 69 SQCKSVRYCSSKCQILHWRRGHKEEC 94
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQWPK-HKELCDQY 446
SRCK+ YC ECQ W H+ C Y
Sbjct: 73 SRCKSVRYCSAECQRSDWSSGHQRNCRDY 101
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQWPK-HKELC 437
SRCK YC +CQ+ W + HK+ C
Sbjct: 86 SRCKAVRYCSGKCQIIHWRQGHKDEC 111
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQW-PKHKELC 437
SRCK+ YC +CQ+ W HK+ C
Sbjct: 142 SRCKSVRYCSGKCQIIHWRVAHKDEC 167
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +3
Query: 363 SRCKTEWYCGRECQVQQWPK-HKELC 437
SRCK+ YC CQ W HK C
Sbjct: 76 SRCKSVRYCSAACQTSDWKSGHKLKC 101
>At2g04235.1 68415.m00411 expressed protein weak similarity to
neurofilament protein (GI:161292) [Loligo pealei]; weak
similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
(Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
cerevisiae]
Length = 1226
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 13 ETMLDQIPPLGELKTFLCRLSVGDYSGLHNRTNGVK--NPGCTLIEVVPQIKDAYVKQIH 186
+ ++ ++ LGE C+ V +YSG+ N+ +K +P C L+ + D +VK
Sbjct: 1012 DILIWKVDSLGEWND--CQSIVLNYSGVFNQRLTLKPGHPSCVLVS--NSLSDTFVKHFP 1067
Query: 187 KRTKSLAKTQLEYFRMDGSEDSRKW 261
+ S+A + M +EDSR++
Sbjct: 1068 EMNVSIA-----FNSMFNAEDSRRY 1087
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 361 HFLQAFSPHLAHLAPPPSSARAVSLAYESRSFFAIF 254
H + SP L+ L P + + L+Y++R+ FAIF
Sbjct: 441 HVISIGSPTLSSLTPYCEAGKNSKLSYDTRTSFAIF 476
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 272 KFLRHFLESSE-PSMRKYSSWVFANDLVRLCICFTYASFI--CG 150
KF+ ++L + E P + +W AND +R +C + S + CG
Sbjct: 156 KFISNYLATLETPPELRQEAWNLANDSLRTTLCVRFRSEVVACG 199
>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 331
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 34 PPLGELKTFLCRLSVGDYSGLHNRTNGVKNPGCTLIEVVPQIKDAYVKQIHKRTK 198
P L + T RL + LH G+K C ++ + IKD + H R+K
Sbjct: 127 PDLTKFSTSSPRL-FSTHMPLHTFKEGLKGSPCKVVYMCRNIKDVLISDWHFRSK 180
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 160 KDAYVKQIHKRTKSLAKTQLE--YFRMDGSEDSRKWRR 267
KD Y +++ K+ K K LE + DGS +WRR
Sbjct: 428 KDEYRRELAKKRKKKKKMTLEAEFCSDDGSSSVSQWRR 465
>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 618
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 269 FLRHFLESSEPSMRKYSSWVFAND 198
FL+HF E EP ++K + +F D
Sbjct: 458 FLKHFWEGDEPEIKKMKTSLFGAD 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,190
Number of Sequences: 28952
Number of extensions: 211101
Number of successful extensions: 581
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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