Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0572.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   4.8  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   8.4  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 440 LKRRTSTSWLLANTM*RKISMVTMRVNSLVATLCR 544
           LKR    S+ LANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 301  LVIRVYYRPWRHLAAAARDLGSSIKS 378
            L I +YY+  RHL+++ R   S +K+
Sbjct: 1400 LAIHIYYQCLRHLSSSVRSYWSEVKN 1425


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 414 LDVQVYVELIPITFDAGAKVSSRGSKVTPRAVVYSDHKGAGCSTEKNF 271
           LD + + ++  I+     ++SS  SKVTP   ++    G   S+  N+
Sbjct: 248 LDTKSFTDVNKISQQGFVEISSNSSKVTPNTSLHQSF-GIASSSSNNY 294


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 280 EKLPETAPSEMLIHEATRTLNIVIK*PRNQRHIVVVEM*RGSLSFEDFSQLC 125
           EK P+T PS  ++H    T  I ++   N+    VV++   +   E+   LC
Sbjct: 500 EKEPDTVPSTFILHR-YYTYRIFVEDRANKTRKPVVQVEHAASKLENVHILC 550


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 471 SQTRCEERSVWLQCASIHSSLRFAGGL 551
           S+ RC   S W++C   H+ L    G+
Sbjct: 384 SEYRCSAASFWVECEQPHADLYSLNGV 410


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 535 ALPEGCTAESVESRLSSYG 591
           ++P G T E  ++RLS YG
Sbjct: 25  SIPNGLTHEEAQNRLSEYG 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,323
Number of Sequences: 5004
Number of extensions: 39757
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)