Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0572.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0454 - 3484319-3486265                                           31   0.92 
03_01_0491 + 3720842-3720958,3721904-3723109                           29   2.1  
07_01_0117 + 894314-896677                                             28   6.5  
04_01_0443 - 5776275-5777921                                           28   6.5  
04_01_0346 - 4536487-4536543,4536714-4536738,4537012-4537285,453...    28   6.5  
04_01_0106 + 1102880-1105691,1105781-1105806                           28   6.5  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   6.5  
04_03_0801 - 19828175-19828770,19828913-19828994                       27   8.6  

>03_01_0454 - 3484319-3486265
          Length = 648

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
 Frame = +1

Query: 157 SLFTSLP-PQYVVDSVVI*LRY*ASSSPHGS--TFRLGLSPEVFLSAAAGPLVIRVYYRP 327
           SL  S P PQ  V  ++I   Y  S  P  +   FRL L   V + AAA   ++    R 
Sbjct: 76  SLLGSSPTPQPRVFDLLI-RTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRA 134

Query: 328 -WRHLAAAARDLGSSIKSDRDKFHVNLDVQHFAPEDLSVKTADVYIVVARKHDVKKDQYG 504
            W HLAA A  L  S  S+ + + +N+ V ++  + L     D  I    K  V  D   
Sbjct: 135 GWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYC-KALEFDKVDAVISEMEKRCVFPDVVT 193

Query: 505 YN 510
           +N
Sbjct: 194 HN 195


>03_01_0491 + 3720842-3720958,3721904-3723109
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 91  EIDRDLERESSDTIE-KSLQNLVSLFTSLPPQ-YVVDS 198
           ++D+DL+   S T E K+ +N V   TS PPQ  VVD+
Sbjct: 36  DVDKDLQHSGSSTTEPKTQENTVQDSTSPPPQPEVVDT 73


>07_01_0117 + 894314-896677
          Length = 787

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 234 ASWINISLGAVSGSFSQCCSRP 299
           +SW+  +LG VS    QCC +P
Sbjct: 452 SSWLKKALGFVSFKIGQCCYKP 473


>04_01_0443 - 5776275-5777921
          Length = 548

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = +1

Query: 274 VFLSAAAGPLVIRVYYRPWRHLAAAARDLGSSIKSDRDKFHVNLDVQHFAPEDLSVKTAD 453
           + L   A P ++  Y+R    +   AR      K+D+        V +    D   K A 
Sbjct: 216 IVLMFGAIPALLTYYWR--MKMPETARYTALVAKNDKKAAADMARVLNVELVDEQEKAAA 273

Query: 454 VYIVVARKHDVKKDQYGYNARQFTRRY 534
                A +   +++QYG  +R+F RR+
Sbjct: 274 ATAAAAEEEAARREQYGLFSREFARRH 300


>04_01_0346 -
           4536487-4536543,4536714-4536738,4537012-4537285,
           4538206-4538236,4539101-4539176,4539244-4539308,
           4539766-4539848,4540489-4541519,4543209-4543507
          Length = 646

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 522 ELTRIVTILIFLHIVFASNHDVDVRRFNREI--FRGEMLDVQVYVELIPITFDAGAKVSS 349
           ++ +  + + +L +V  + ++++++ F+  I  FRG MLD    +EL    F  G    +
Sbjct: 573 KIKKAQSTIYYLEMVDINTNELELQAFHPSISGFRGSMLDSSESLELSIAGFSGGRMNDA 632

Query: 348 RGSK 337
             SK
Sbjct: 633 ENSK 636


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 328 WRHLAAAARDLGSSIKSDRD-KFHVNLDVQHFAPEDLSVKTADVYIVVARKHDVK 489
           W+ LAA  ++  + +++ R+ K   N+D+   +P  +  + + V+ +   KH+ K
Sbjct: 119 WQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNK 173


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 226 SSSPHGST-FRLGLSPEVFLSAAAGPLVIRVYYRPWRHLAAAARDLGSSIKSDRDKFHVN 402
           S++  GST + L  +  V     AG  +    Y+ W   A A   L +    + ++  VN
Sbjct: 233 SNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVN 292

Query: 403 LDVQHFAPEDLSVKTAD 453
           +D +  +P   +V T D
Sbjct: 293 VDARTLSPSSNNVCTVD 309


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 258 GAVSGSFSQCCSRPPCD-QSILPPVASPCCRG 350
           G   G    CCS PPC  Q + PP   PC  G
Sbjct: 182 GGGGGCKKPCCSPPPCPWQPVCPP--PPCGGG 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,477
Number of Sequences: 37544
Number of extensions: 326055
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)