Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0572.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45135.1 68415.m05617 expressed protein ; expression supporte...    28   4.1  
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE...    28   4.1  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    28   5.4  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    28   5.4  
At2g20470.1 68415.m02390 protein kinase, putative contains prote...    28   5.4  
At5g42100.2 68418.m05126 glycosyl hydrolase family 17 protein si...    27   7.2  
At5g42100.1 68418.m05125 glycosyl hydrolase family 17 protein si...    27   7.2  

>At2g45135.1 68415.m05617 expressed protein ; expression supported
           by MPSS
          Length = 304

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 251 FAWGCLRKFFSVLQPAPL*SEYTTARGVTL 340
           ++WG LR   SVL+P  L S Y  + G TL
Sbjct: 275 YSWGHLRTASSVLKPPALRSLYFNSLGTTL 304


>At2g31510.1 68415.m03850 IBR domain-containing protein /
           ARIADNE-like protein ARI7 (ARI7) identical to
           ARIADNE-like protein ARI7 [Arabidopsis thaliana]
           GI:29125028; contains similarity to Swiss-Prot:Q94981
           ariadne-1 protein (Ari-1) [Drosophila melanogaster];
           contains Pfam profile PF01485: IBR domain
          Length = 562

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 452 TSTSWLLANTM*RKISMVTMRVNSLVATLCRRAVRLNLWSPGCLHMVC 595
           T + W+L N+     +M  +  NS     C+R +  N    GC+HM C
Sbjct: 270 TVSKWILKNSA-ESENMNWILANSKPCPRCKRPIEKN---QGCMHMTC 313


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1329

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 210 ITILSVLVASW----INISLGAVSGSFSQCCSRPPCDQSIL--PPVASPCC 344
           I + S   +SW    ++ISLGAV  +     +  PC  SIL    V+S CC
Sbjct: 547 IPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSVSSQCC 597


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1379

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 210 ITILSVLVASW----INISLGAVSGSFSQCCSRPPCDQSIL--PPVASPCC 344
           I + S   +SW    ++ISLGAV  +     +  PC  SIL    V+S CC
Sbjct: 605 IPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSVSSQCC 655


>At2g20470.1 68415.m02390 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 SQCCSRPPCDQSILPPVASPCCRGS 353
           S+  SRPPCD+   PP A P  +GS
Sbjct: 554 SETTSRPPCDR---PPPAPPVVQGS 575


>At5g42100.2 68418.m05126 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 423

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 223 ASSSPHGSTFRLGLSPEVFLSAAAGPLVIRVYYRPWRHLAAAARDLGSSIKSDRDKFHV 399
           A  S HG+    GL+ ++F++ A    ++ V Y P     +  RDL  S+    D FHV
Sbjct: 135 AMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPP--SATSFRRDLLGSLTPILD-FHV 190


>At5g42100.1 68418.m05125 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 425

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 223 ASSSPHGSTFRLGLSPEVFLSAAAGPLVIRVYYRPWRHLAAAARDLGSSIKSDRDKFHV 399
           A  S HG+    GL+ ++F++ A    ++ V Y P     +  RDL  S+    D FHV
Sbjct: 135 AMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPP--SATSFRRDLLGSLTPILD-FHV 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,501
Number of Sequences: 28952
Number of extensions: 227461
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)